Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0628
(627 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_03_0561 - 15476484-15476649,15476814-15476893,15476971-154770... 84 8e-17
11_01_0656 - 5301048-5301441,5301779-5301976,5302056-5302228,530... 57 1e-08
10_01_0089 + 1103841-1104152,1104809-1104946,1105527-1105631,110... 56 2e-08
12_02_0966 - 24906361-24906958,24907084-24907250,24907403-249076... 50 2e-06
06_01_0079 - 633595-633985,634346-634543,634864-635036,635355-63... 48 8e-06
06_03_0867 + 25534760-25539620,25540662-25540857,25540957-255411... 32 0.32
01_05_0677 - 24202037-24202444,24202499-24202795,24202960-242030... 31 0.99
12_02_0725 - 22545423-22546251,22546352-22546547,22546791-225469... 29 2.3
11_01_0236 + 1811822-1812971,1814930-1814979,1815676-1816116,181... 29 3.0
03_02_0350 - 7734494-7734952,7735765-7736133 29 3.0
12_01_0477 + 3742751-3745200,3747192-3747502,3747886-3748232 29 4.0
06_01_0063 - 534138-534605 29 4.0
03_06_0106 - 31682200-31682775 29 4.0
12_02_0536 - 20121381-20121974,20122000-20122201,20122300-201224... 28 5.3
12_01_0906 + 8799284-8799441,8800865-8801690,8801933-8802055,880... 28 7.0
07_03_0684 + 20675947-20676157,20676236-20676336,20676428-206766... 28 7.0
03_06_0327 - 33158131-33158315,33158586-33158639,33159149-331591... 28 7.0
11_06_0193 - 21132793-21132986,21133376-21133504,21133648-21133681 27 9.2
>05_03_0561 -
15476484-15476649,15476814-15476893,15476971-15477030,
15477117-15477210,15477287-15477421,15477601-15477656,
15478359-15478460,15478544-15478651,15479206-15479283,
15479432-15479521,15480061-15480123
Length = 343
Score = 84.2 bits (199), Expect = 8e-17
Identities = 43/89 (48%), Positives = 60/89 (67%), Gaps = 6/89 (6%)
Frame = +2
Query: 2 AMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKDLFEEKIRRSPLTI 181
A+SEYDQ+L EDET NRM E+ +LFD + + F TS ILFLNK D+FE+KI++ PL++
Sbjct: 208 AISEYDQMLFEDETKNRMMETKELFDWVLKQRCFEKTSFILFLNKFDIFEKKIQKVPLSV 267
Query: 182 C--FPEY----TGAQEYGEAAAYIQAQFE 250
C F +Y G QE A +++ +FE
Sbjct: 268 CEWFKDYQPIAPGKQEVEHAYEFVKKKFE 296
>11_01_0656 - 5301048-5301441,5301779-5301976,5302056-5302228,
5302691-5302935,5303014-5303191,5303578-5303760,
5303858-5303962,5304621-5304758,5304846-5305802
Length = 856
Score = 57.2 bits (132), Expect = 1e-08
Identities = 39/132 (29%), Positives = 66/132 (50%), Gaps = 15/132 (11%)
Frame = +2
Query: 2 AMSEYDQVL-----HEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKDLFEEKIRR 166
A+S+YDQV N+M +S +LF++ F DT +L LNK DLFEEKI R
Sbjct: 692 ALSDYDQVGPPVYGSSRPLLNKMMQSKELFEATIRQPCFCDTPFVLVLNKYDLFEEKINR 751
Query: 167 SPLTIC--FPEYTGAQEY-------GEAAAYIQAQF-EAKNKSTTKEIYCHMTCATDTNN 316
+PLT C F +++ + + +A Y+ +F + + T ++++ A D
Sbjct: 752 APLTTCEWFNDFSPVRTHHNNQSLAQQAYYYVAVKFKDLYYEHTGRKLFVWQARARDRQT 811
Query: 317 IQFVFDAVTDVI 352
+ F V +++
Sbjct: 812 VDEAFKYVREIL 823
>10_01_0089 +
1103841-1104152,1104809-1104946,1105527-1105631,
1106403-1106577,1107124-1107398,1108222-1108391,
1108508-1109084
Length = 583
Score = 56.0 bits (129), Expect = 2e-08
Identities = 28/63 (44%), Positives = 38/63 (60%), Gaps = 2/63 (3%)
Frame = +2
Query: 2 AMSEYDQ--VLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKDLFEEKIRRSPL 175
++++YDQ V E N+M S LF+ + + F DT +L LNK D FEEKI R PL
Sbjct: 424 SLADYDQTWVQSSGEPCNKMIASRDLFEDVIRHPSFEDTPCVLLLNKYDAFEEKISRVPL 483
Query: 176 TIC 184
T+C
Sbjct: 484 TVC 486
>12_02_0966 -
24906361-24906958,24907084-24907250,24907403-24907650,
24907824-24908001,24908196-24908372,24908459-24908563,
24908633-24908770,24909757-24910836
Length = 896
Score = 49.6 bits (113), Expect = 2e-06
Identities = 26/70 (37%), Positives = 41/70 (58%), Gaps = 4/70 (5%)
Frame = +2
Query: 2 AMSEYDQVLHE--DETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKDLFEEKIRRSPL 175
A+S+YD+ + N+M E+ +LF+SI + F +L L K D+ E+KI +SPL
Sbjct: 730 AVSDYDEYYEDANGNVVNKMMETRQLFESIALHPIFEQMDFLLLLTKFDILEQKIGKSPL 789
Query: 176 TIC--FPEYT 199
T C F ++T
Sbjct: 790 TSCDWFSDFT 799
>06_01_0079 -
633595-633985,634346-634543,634864-635036,635355-635599,
635683-635860,636291-636473,636769-636873,637709-637846,
637933-638925
Length = 867
Score = 47.6 bits (108), Expect = 8e-06
Identities = 27/66 (40%), Positives = 36/66 (54%), Gaps = 5/66 (7%)
Frame = +2
Query: 2 AMSEYDQVLHEDE-----TTNRMQESLKLFDSICNNKWFTDTSIILFLNKKDLFEEKIRR 166
A+S+YDQ+ N+M +S LF++ F D +L LNK DLFEEKI R
Sbjct: 704 ALSDYDQLGAPSSGGNSPLVNKMIQSRDLFEATIRQPCFRDMPFVLVLNKFDLFEEKIGR 763
Query: 167 SPLTIC 184
PL+ C
Sbjct: 764 VPLSTC 769
>06_03_0867 +
25534760-25539620,25540662-25540857,25540957-25541104,
25541673-25541751,25542151-25542238,25542330-25542600,
25542676-25542718,25542801-25542904,25543374-25543790
Length = 2068
Score = 32.3 bits (70), Expect = 0.32
Identities = 18/53 (33%), Positives = 21/53 (39%)
Frame = +1
Query: 253 EEQVHHEGDLLPHDVRHRHEQHPVCVRRGDRRDHRQQPARLRPVLAASHPPPL 411
E HH+ L H H H P V+ H+Q PA P PPPL
Sbjct: 50 ESHSHHQYHLPDHHHHHHHHHPPPRVQHHHHHHHQQLPA---PTPPPPPPPPL 99
>01_05_0677 -
24202037-24202444,24202499-24202795,24202960-24203009,
24204534-24204589,24205751-24206040,24206100-24206488,
24210578-24210818
Length = 576
Score = 30.7 bits (66), Expect = 0.99
Identities = 16/47 (34%), Positives = 26/47 (55%)
Frame = +1
Query: 304 RHEQHPVCVRRGDRRDHRQQPARLRPVLAASHPPPLLHIFIHRYFYI 444
+H+Q+ C++ G R R P+ P ++S PP H FI +F+I
Sbjct: 270 KHKQYKPCLQLGTPRAPRTMPSS-HPGASSSTAPPRPHGFIVIWFFI 315
>12_02_0725 -
22545423-22546251,22546352-22546547,22546791-22546973,
22547076-22547275,22548030-22548133
Length = 503
Score = 29.5 bits (63), Expect = 2.3
Identities = 14/50 (28%), Positives = 22/50 (44%)
Frame = +2
Query: 59 ESLKLFDSICNNKWFTDTSIILFLNKKDLFEEKIRRSPLTICFPEYTGAQ 208
+S L+ + KW +D+ +KD EK R P PE+ +Q
Sbjct: 175 DSRPLYSGLSCKKWLSDSWACRLTQRKDFAYEKFRWQPEGCDMPEFQASQ 224
>11_01_0236 + 1811822-1812971,1814930-1814979,1815676-1816116,
1816199-1816309,1816934-1817074,1817153-1817323,
1817421-1817625,1817714-1817886,1817997-1818079,
1818487-1818626,1818806-1818891,1818957-1819142,
1819172-1819365,1820387-1820736,1821153-1821235
Length = 1187
Score = 29.1 bits (62), Expect = 3.0
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = +1
Query: 322 VCVRRGDRRDHRQQPARLRPVLAASHPPP 408
V + RG R + + RLRPVL PPP
Sbjct: 972 VTLSRGGRASNLSRGRRLRPVLLLDEPPP 1000
>03_02_0350 - 7734494-7734952,7735765-7736133
Length = 275
Score = 29.1 bits (62), Expect = 3.0
Identities = 12/22 (54%), Positives = 14/22 (63%)
Frame = +1
Query: 85 LQQQMVHRHQHHLVPEQEGSLR 150
LQQQ H HQHH +Q+ LR
Sbjct: 195 LQQQQHHHHQHHHHQQQQHQLR 216
>12_01_0477 + 3742751-3745200,3747192-3747502,3747886-3748232
Length = 1035
Score = 28.7 bits (61), Expect = 4.0
Identities = 15/36 (41%), Positives = 16/36 (44%)
Frame = +1
Query: 265 HHEGDLLPHDVRHRHEQHPVCVRRGDRRDHRQQPAR 372
H D P D R R VR GDRR H +P R
Sbjct: 83 HARRDARPRDDRGRDGPRDDRVRHGDRRPHDYRPRR 118
>06_01_0063 - 534138-534605
Length = 155
Score = 28.7 bits (61), Expect = 4.0
Identities = 15/39 (38%), Positives = 18/39 (46%)
Frame = +1
Query: 298 RHRHEQHPVCVRRGDRRDHRQQPARLRPVLAASHPPPLL 414
R RH H C+ HR P P+L +S PP LL
Sbjct: 110 RCRHVFHRACLDAWAHHGHRTCPLCRSPLLPSSAPPVLL 148
>03_06_0106 - 31682200-31682775
Length = 191
Score = 28.7 bits (61), Expect = 4.0
Identities = 13/30 (43%), Positives = 13/30 (43%)
Frame = +1
Query: 319 PVCVRRGDRRDHRQQPARLRPVLAASHPPP 408
P RG H P R L ASHPPP
Sbjct: 108 PTSTSRGRATSHSSAPPRSCWTLTASHPPP 137
>12_02_0536 -
20121381-20121974,20122000-20122201,20122300-20122495,
20122746-20122928,20123031-20123187
Length = 443
Score = 28.3 bits (60), Expect = 5.3
Identities = 13/46 (28%), Positives = 20/46 (43%)
Frame = +2
Query: 71 LFDSICNNKWFTDTSIILFLNKKDLFEEKIRRSPLTICFPEYTGAQ 208
L+ + KW +D+ +KD EK R P PE+ +Q
Sbjct: 130 LYSGLSCKKWLSDSWACRLTQRKDFAYEKFRWQPEGCDMPEFQASQ 175
>12_01_0906 +
8799284-8799441,8800865-8801690,8801933-8802055,
8802144-8802210,8802611-8802714,8802798-8802900,
8803103-8803401,8804009-8804263,8805471-8805776,
8805866-8806194,8806829-8806916,8807027-8807164,
8807438-8807458
Length = 938
Score = 27.9 bits (59), Expect = 7.0
Identities = 12/27 (44%), Positives = 14/27 (51%)
Frame = +1
Query: 334 RGDRRDHRQQPARLRPVLAASHPPPLL 414
RG R + R+ P R P PPPLL
Sbjct: 173 RGGREERRRSPDRKEPTPPLPPPPPLL 199
>07_03_0684 +
20675947-20676157,20676236-20676336,20676428-20676630,
20677024-20677438
Length = 309
Score = 27.9 bits (59), Expect = 7.0
Identities = 12/19 (63%), Positives = 13/19 (68%)
Frame = -1
Query: 258 FFASNCAWMYAAASPYSCA 202
F A C+W AAASP SCA
Sbjct: 234 FTADACSWGTAAASPPSCA 252
>03_06_0327 -
33158131-33158315,33158586-33158639,33159149-33159180,
33159275-33159369,33159466-33159539,33159643-33159778,
33159874-33159937,33160017-33160079,33160160-33160299,
33160487-33160627,33160747-33160868,33160947-33161112,
33161194-33161313,33161580-33161651,33161787-33161843,
33162036-33162152,33162231-33162369,33162794-33162900,
33162972-33163081,33163172-33163305,33163397-33163546,
33163635-33163840,33166123-33166818
Length = 1059
Score = 27.9 bits (59), Expect = 7.0
Identities = 21/70 (30%), Positives = 31/70 (44%), Gaps = 2/70 (2%)
Frame = -1
Query: 273 FVVDLFFASNCAWMYAAASPYSCAPVYSGKHM--VSGDLRIFSSKRSFLFRNKMMLVSVN 100
FV + A A AAA+P A V S K + VS ++ F K +++ N
Sbjct: 158 FVSETALAPPAAVASAAAAPAGEASVESDKDLAPVSKKGLAHPARPGFGAAGKKVMIRAN 217
Query: 99 HLLLQIESNN 70
H L+ + NN
Sbjct: 218 HFLVNVADNN 227
>11_06_0193 - 21132793-21132986,21133376-21133504,21133648-21133681
Length = 118
Score = 27.5 bits (58), Expect = 9.2
Identities = 17/64 (26%), Positives = 21/64 (32%), Gaps = 1/64 (1%)
Frame = -2
Query: 425 INICNSGGGCEAASTGRSRAGCWXXXXXXXXRTQTGCC-SCRWRTSCGSRSPSWWTCSSL 249
+ C GG CE +S R C T C C + C S + S
Sbjct: 15 LQYCGDGGSCERSSEFGHRCACHDGFQNLLNDTSYPCYRQCSLGSDCSGLGISMFNGSQP 74
Query: 248 RTAP 237
TAP
Sbjct: 75 GTAP 78
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,767,927
Number of Sequences: 37544
Number of extensions: 323447
Number of successful extensions: 1145
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1142
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1525730988
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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