Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0628
         (627 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_977| Best HMM Match : No HMM Matches (HMM E-Value=.)               206   1e-53
SB_30236| Best HMM Match : No HMM Matches (HMM E-Value=.)             126   1e-29
SB_8302| Best HMM Match : G-alpha (HMM E-Value=0)                     118   3e-27
SB_49453| Best HMM Match : No HMM Matches (HMM E-Value=.)             116   1e-26
SB_14105| Best HMM Match : G-alpha (HMM E-Value=0)                    111   4e-25
SB_19713| Best HMM Match : No HMM Matches (HMM E-Value=.)              48   6e-06
SB_16501| Best HMM Match : Fork_head (HMM E-Value=3.3e-29)             31   0.77 
SB_16338| Best HMM Match : PHD (HMM E-Value=3.8e-08)                   31   1.0  
SB_56972| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.3  
SB_22143| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.3  
SB_34988| Best HMM Match : zf-CCHC (HMM E-Value=3e-12)                 28   7.1  
SB_14817| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.1  
SB_29972| Best HMM Match : zf-CCHC (HMM E-Value=9.3e-05)               27   9.4  
SB_37761| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.4  
SB_22845| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.4  

>SB_977| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 765

 Score =  206 bits (503), Expect = 1e-53
 Identities = 100/124 (80%), Positives = 104/124 (83%), Gaps = 1/124 (0%)
 Frame = +2

Query: 2   AMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKDLFEEKIRRSPLTI 181
           A+S YD VL EDE  NRM ES+KLFDSICNNKWFTDTSIILFLNKKDLF EKI +SPLTI
Sbjct: 226 ALSAYDLVLAEDEEMNRMMESMKLFDSICNNKWFTDTSIILFLNKKDLFAEKIVKSPLTI 285

Query: 182 CFPEYTGAQEYGEAAAYIQAQFEAKNK-STTKEIYCHMTCATDTNNIQFVFDAVTDVIIA 358
           CFPEYTG+  Y EAAAYIQ QFE  NK   TKEIY H TCATDTNNIQFVFDAVTDVII 
Sbjct: 286 CFPEYTGSNTYEEAAAYIQMQFENLNKRKDTKEIYTHFTCATDTNNIQFVFDAVTDVIIK 345

Query: 359 NNLR 370
           NNLR
Sbjct: 346 NNLR 349


>SB_30236| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 353

 Score =  126 bits (304), Expect = 1e-29
 Identities = 68/124 (54%), Positives = 81/124 (65%), Gaps = 1/124 (0%)
 Frame = +2

Query: 2   AMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKDLFEEKIRRSPLTI 181
           A+SEYDQVL E ++ NRM+ES  LF +I    WF ++SIILFLNKKDL EEKI  S L  
Sbjct: 225 ALSEYDQVLVESDSENRMEESKALFRTIITYPWFQNSSIILFLNKKDLLEEKIMFSHLVE 284

Query: 182 CFPEYTGAQEYGEAA-AYIQAQFEAKNKSTTKEIYCHMTCATDTNNIQFVFDAVTDVIIA 358
            FPE+ G Q   +AA  +I   F   N  T K IY H TCATDT NI+FVF AV D I+ 
Sbjct: 285 YFPEFDGPQCDAQAAREFILKMFVDLNPDTDKIIYSHFTCATDTENIRFVFAAVKDTILQ 344

Query: 359 NNLR 370
            NL+
Sbjct: 345 LNLK 348


>SB_8302| Best HMM Match : G-alpha (HMM E-Value=0)
          Length = 315

 Score =  118 bits (285), Expect = 3e-27
 Identities = 52/71 (73%), Positives = 61/71 (85%)
 Frame = +2

Query: 2   AMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKDLFEEKIRRSPLTI 181
           A+S YD  L EDE+TNRM+ESLKLF+SI NNKWF DTS+ILFLNKKDLFEEKI + PLT+
Sbjct: 227 ALSAYDLSLEEDESTNRMEESLKLFESIINNKWFVDTSVILFLNKKDLFEEKISKFPLTL 286

Query: 182 CFPEYTGAQEY 214
           CFPEY+G  +Y
Sbjct: 287 CFPEYSGGPKY 297


>SB_49453| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1117

 Score =  116 bits (280), Expect = 1e-26
 Identities = 51/67 (76%), Positives = 59/67 (88%)
 Frame = +2

Query: 2   AMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKDLFEEKIRRSPLTI 181
           A+S YD  L EDE+TNRM+ESLKLF+SI NNKWF DTS+ILFLNKKDLFEEKI + PLT+
Sbjct: 275 ALSAYDLTLEEDESTNRMEESLKLFESIINNKWFVDTSVILFLNKKDLFEEKISKFPLTL 334

Query: 182 CFPEYTG 202
           CFPEY+G
Sbjct: 335 CFPEYSG 341


>SB_14105| Best HMM Match : G-alpha (HMM E-Value=0)
          Length = 320

 Score =  111 bits (267), Expect = 4e-25
 Identities = 51/123 (41%), Positives = 83/123 (67%)
 Frame = +2

Query: 2   AMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKDLFEEKIRRSPLTI 181
           ++S YD+ L E+E TN M +SL LF+ I + ++  +T  ILFLNK DLF +K+ +S L+ 
Sbjct: 194 SLSSYDEQLEEEEDTNAMLDSLDLFEEITHCEFLANTQFILFLNKLDLFNKKLSKSDLSN 253

Query: 182 CFPEYTGAQEYGEAAAYIQAQFEAKNKSTTKEIYCHMTCATDTNNIQFVFDAVTDVIIAN 361
           CFPE+ G  + G+A  Y++ QF ++ K   K IY H+TCAT+T+ ++ V + V ++++  
Sbjct: 254 CFPEFKGGTDPGKALEYVKEQFMSR-KPADKHIYVHVTCATETDPMKPVLEDVFEILVGI 312

Query: 362 NLR 370
           NL+
Sbjct: 313 NLK 315


>SB_19713| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 507

 Score = 48.0 bits (109), Expect = 6e-06
 Identities = 20/47 (42%), Positives = 30/47 (63%)
 Frame = +2

Query: 230 YIQAQFEAKNKSTTKEIYCHMTCATDTNNIQFVFDAVTDVIIANNLR 370
           +I   F++K +  +K ++ H T A DT NI+FVF AV D I+  NL+
Sbjct: 456 FILQMFDSKRRERSKALFHHFTTAVDTENIKFVFHAVKDTILQENLK 502


>SB_16501| Best HMM Match : Fork_head (HMM E-Value=3.3e-29)
          Length = 594

 Score = 31.1 bits (67), Expect = 0.77
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = +1

Query: 352 HRQQPARLRPVLAASHPPPLL 414
           H  Q A+ RPV   +HPPPLL
Sbjct: 146 HHSQSAQPRPVAVVAHPPPLL 166


>SB_16338| Best HMM Match : PHD (HMM E-Value=3.8e-08)
          Length = 652

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 31/97 (31%), Positives = 38/97 (39%)
 Frame = -2

Query: 419 ICNSGGGCEAASTGRSRAGCWXXXXXXXXRTQTGCCSCRWRTSCGSRSPSWWTCSSLRTA 240
           IC +GGGCEAA   R+R+  W           +   S R R     +  S    S++  A
Sbjct: 525 IC-AGGGCEAAIITRTRS-AWGKFKELLPVLSSKSLSLRTR----GKVYSSCVRSAMLYA 578

Query: 239 PGCTRPPRRTLARLYILESIW*AAICEFFPRRDPSCS 129
             C  P    LARL   E      IC   P  D S S
Sbjct: 579 GECWAPKSSDLARLQRSEHAMLRWICVLKPEDDTSLS 615


>SB_56972| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 868

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 12/38 (31%), Positives = 22/38 (57%)
 Frame = +2

Query: 404 RHYYIYLYTAIFISKIKKKTALSNLTDTHAANDKDNSK 517
           R+ Y+ +  AIF++ + + T L   T  HA + K ++K
Sbjct: 5   RYVYVVINVAIFVTSVTRSTFLFRTTLRHAGDSKGDAK 42


>SB_22143| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1995

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 15/53 (28%), Positives = 24/53 (45%)
 Frame = +1

Query: 253  EEQVHHEGDLLPHDVRHRHEQHPVCVRRGDRRDHRQQPARLRPVLAASHPPPL 411
            EE++       P       E  PV  +RG   D+ ++PA+ +PV   +  P L
Sbjct: 1413 EERIKRSAKNRPSTAAAPEEPKPVARQRGPTADNDKKPAKAQPVARPATAPAL 1465


>SB_34988| Best HMM Match : zf-CCHC (HMM E-Value=3e-12)
          Length = 469

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = +1

Query: 250 SEEQVHHEGDLLPHDVRHRHEQHPVCVRRGDRRDHRQQP 366
           S++Q+H   D   H   H H  H    +RG +R+H + P
Sbjct: 253 SQQQLHQRDDS-GHSHGHAHTPHSHEGKRGRKREHDRDP 290


>SB_14817| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 594

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = +2

Query: 419 YLYTAIFISKIKKKTALSNLTDTHAANDKDNSKNEYRKI 535
           + Y + F + I  K++ S  TD+H  +D+     E RKI
Sbjct: 258 FSYCSDFNNSIDSKSSTSGFTDSHEESDEIEKAAERRKI 296


>SB_29972| Best HMM Match : zf-CCHC (HMM E-Value=9.3e-05)
          Length = 285

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 21/81 (25%), Positives = 31/81 (38%), Gaps = 4/81 (4%)
 Frame = +2

Query: 290 MTCATDTNNIQFVFDAVTDVIIANNLRGCGLY*PPRTRR--HYYIYLYTAIFISKIK--K 457
           +TC   T     + D +   +++N LRG  L  P  T +  H Y   Y A  + K K   
Sbjct: 97  LTCEFGTLRDSLIRDCIVGGVLSNELRGELLKKPDLTLQSAHDYCRTYEAAELQKFKFAS 156

Query: 458 KTALSNLTDTHAANDKDNSKN 520
            T        H    K+ + N
Sbjct: 157 PTGSQQPLSVHPVQGKERAPN 177


>SB_37761| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 540

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 12/45 (26%), Positives = 20/45 (44%)
 Frame = -1

Query: 255 FASNCAWMYAAASPYSCAPVYSGKHMVSGDLRIFSSKRSFLFRNK 121
           F  N  W     S      +  GKH   GD+R+   +R F+ +++
Sbjct: 385 FGFNENWTKGPISDPGALEMNIGKHFFEGDIRLTQKQRDFIEKSR 429


>SB_22845| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1422

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 20/60 (33%), Positives = 26/60 (43%), Gaps = 3/60 (5%)
 Frame = +1

Query: 262  VHHEGDLLPHDVRHRHEQHPVCVRRGDRRDHRQQPARLRPVLAASHP--PPLLHIF-IHR 432
            VH  G       +HRH   P   + GDR +  + P  L  +    HP    L+H F IHR
Sbjct: 1057 VHGHGTPPEGHHKHRHRGSPASEQHGDRPE--RPPEELSRMYLPPHPDGAALMHPFLIHR 1114


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,208,428
Number of Sequences: 59808
Number of extensions: 369924
Number of successful extensions: 1168
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1057
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1150
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1560464625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)