Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0628
         (627 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    24   1.4  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   4.3  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    21   7.4  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    21   7.4  
DQ325077-1|ABD14091.1|  181|Apis mellifera complementary sex det...    21   9.8  

>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 11/34 (32%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
 Frame = +2

Query: 113 SIILFLNKKDLFEEK--IRRSPLTICFPEYTGAQ 208
           +++ F+NK D +EE   +   PL I   +Y G +
Sbjct: 80  NVLYFINKNDKYEENTILTTMPLLINVVKYLGGK 113


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 11/39 (28%), Positives = 18/39 (46%)
 Frame = +1

Query: 265 HHEGDLLPHDVRHRHEQHPVCVRRGDRRDHRQQPARLRP 381
           +H   L    V+  H  +    ++  R+  RQ+  RLRP
Sbjct: 146 NHHHHLQSTAVQDHHRPYQQQQQQQQRQQQRQEERRLRP 184


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = +3

Query: 492 LLTIKIIRKTNIEKSNPRPETIVSNLLQDSSKLQLVISN 608
           L TI +I    I   NP  + +  +LL + ++L   +SN
Sbjct: 3   LQTIILILSARICHGNPDAKRLYDDLLSNYNRLIRPVSN 41


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = +3

Query: 537 NPRPETIVSNLLQDSSK 587
           NP+P T    LLQD SK
Sbjct: 224 NPQPLTGQQELLQDFSK 240


>DQ325077-1|ABD14091.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = +2

Query: 461 TALSNLTDTHAANDKDNSKNEYRKI 535
           ++LSN T  +  N  +N+ N Y+K+
Sbjct: 83  SSLSNKTIHNNNNYNNNNYNNYKKL 107


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 162,835
Number of Sequences: 438
Number of extensions: 3473
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18704709
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)