Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0628
(627 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g26300.1 68415.m03156 guanine nucleotide binding protein (G-p... 79 2e-15
At1g31930.2 68414.m03924 extra-large guanine nucleotide binding ... 56 2e-08
At1g31930.1 68414.m03923 extra-large guanine nucleotide binding ... 56 2e-08
At2g23460.1 68415.m02801 extra-large guanine nucleotide binding ... 56 3e-08
At4g34390.1 68417.m04885 extra-large guanine nucleotide binding ... 36 0.022
At1g53190.1 68414.m06028 zinc finger (C3HC4-type RING finger) fa... 30 1.4
At2g46260.1 68415.m05752 BTB/POZ domain-containing protein conta... 28 4.4
At2g38460.1 68415.m04723 iron transporter-related contains tran... 28 5.8
At5g44260.1 68418.m05416 zinc finger (CCCH-type) family protein ... 27 7.7
At2g45100.1 68415.m05613 transcription factor IIB (TFIIB) family... 27 7.7
>At2g26300.1 68415.m03156 guanine nucleotide binding protein
(G-protein) alpha-1 subunit / GP-alpha-1 (GPA1)
identical to SP|P18064 Guanine nucleotide-binding
protein alpha-1 subunit (GP-alpha-1) {Arabidopsis
thaliana}
Length = 383
Score = 79.0 bits (186), Expect = 2e-15
Identities = 50/139 (35%), Positives = 71/139 (51%), Gaps = 12/139 (8%)
Frame = +2
Query: 2 AMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKDLFEEKIRRSPLTI 181
A+SEYDQ L EDE NRM E+ +LFD + F TS +LFLNK D+FE+K+ PL +
Sbjct: 244 AISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKFDIFEKKVLDVPLNV 303
Query: 182 C--FPEY----TGAQEYGEAAAYIQAQFEAKNKSTT------KEIYCHMTCATDTNNIQF 325
C F +Y +G QE A +++ +FE T + + T A D ++
Sbjct: 304 CEWFRDYQPVSSGKQEIEHAYEFVKKKFEELYYQNTAPDRVDRVFKIYRTTALDQKLVKK 363
Query: 326 VFDAVTDVIIANNLRGCGL 382
F V + + NL GL
Sbjct: 364 TFKLVDETLRRRNLLEAGL 382
>At1g31930.2 68414.m03924 extra-large guanine nucleotide binding
protein, putative / G-protein, putative similar to
extra-large G-protein (XLG) [Arabidopsis thaliana]
GI:3201680; contains Pfam profile PF00503: G-protein
alpha subunit
Length = 848
Score = 56.0 bits (129), Expect = 2e-08
Identities = 29/67 (43%), Positives = 43/67 (64%), Gaps = 6/67 (8%)
Frame = +2
Query: 2 AMSEYDQVLHEDETT------NRMQESLKLFDSICNNKWFTDTSIILFLNKKDLFEEKIR 163
++S+YDQ+ E++ N+M +S +LF+S+ + F DT IL LNK D FEEK+
Sbjct: 683 SLSDYDQINITPESSGTVQYQNKMIQSKELFESMVKHPCFKDTPFILILNKYDQFEEKLN 742
Query: 164 RSPLTIC 184
R+PLT C
Sbjct: 743 RAPLTSC 749
>At1g31930.1 68414.m03923 extra-large guanine nucleotide binding
protein, putative / G-protein, putative similar to
extra-large G-protein (XLG) [Arabidopsis thaliana]
GI:3201680; contains Pfam profile PF00503: G-protein
alpha subunit
Length = 848
Score = 56.0 bits (129), Expect = 2e-08
Identities = 29/67 (43%), Positives = 43/67 (64%), Gaps = 6/67 (8%)
Frame = +2
Query: 2 AMSEYDQVLHEDETT------NRMQESLKLFDSICNNKWFTDTSIILFLNKKDLFEEKIR 163
++S+YDQ+ E++ N+M +S +LF+S+ + F DT IL LNK D FEEK+
Sbjct: 683 SLSDYDQINITPESSGTVQYQNKMIQSKELFESMVKHPCFKDTPFILILNKYDQFEEKLN 742
Query: 164 RSPLTIC 184
R+PLT C
Sbjct: 743 RAPLTSC 749
>At2g23460.1 68415.m02801 extra-large guanine nucleotide binding
protein / G-protein (XLG) identical to extra-large
G-protein (XLG) [Arabidopsis thaliana] GI:3201680
Length = 888
Score = 55.6 bits (128), Expect = 3e-08
Identities = 28/61 (45%), Positives = 39/61 (63%)
Frame = +2
Query: 2 AMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKDLFEEKIRRSPLTI 181
+MS+YDQV ++ TN+M + KLF+SI + F + +L LNK DL EEK+ R PL
Sbjct: 733 SMSDYDQV--SEDGTNKMLLTKKLFESIITHPIFENMDFLLILNKYDLLEEKVERVPLAR 790
Query: 182 C 184
C
Sbjct: 791 C 791
>At4g34390.1 68417.m04885 extra-large guanine nucleotide binding
protein, putative / G-protein, putative similar to
extra-large G-protein (XLG) [Arabidopsis thaliana]
GI:3201680; contains Pfam profile PF00503: G-protein
alpha subunit
Length = 861
Score = 35.9 bits (79), Expect = 0.022
Identities = 18/63 (28%), Positives = 34/63 (53%), Gaps = 2/63 (3%)
Frame = +2
Query: 2 AMSEYDQVLHEDE--TTNRMQESLKLFDSICNNKWFTDTSIILFLNKKDLFEEKIRRSPL 175
++++Y + + + E N+M + +LF+++ + + +L L K DL EEKI PL
Sbjct: 696 SLTDYAENIEDGEGNIVNKMLATKQLFENMVTHPSLANKRFLLVLTKFDLLEEKIEEVPL 755
Query: 176 TIC 184
C
Sbjct: 756 RTC 758
>At1g53190.1 68414.m06028 zinc finger (C3HC4-type RING finger)
family protein similar to RING-H2 finger protein RHG1a
GI:3822225 from [Arabidopsis thaliana]; contains Pfam
profile PF00097: Zinc finger, C3HC4 type (RING finger)
Length = 494
Score = 29.9 bits (64), Expect = 1.4
Identities = 25/95 (26%), Positives = 33/95 (34%), Gaps = 3/95 (3%)
Frame = +1
Query: 103 HRHQHHLVPEQEGSLRGKNSQIAAHHMLSRIY--XXXXXXXXXXXXXXXXXSEEQVHHEG 276
+ H HH P +RG+N+ + H S Y SE H G
Sbjct: 256 YSHHHHPAPPPVQGMRGQNATLYPHTASSASYRVPPGSFTPQNTMNSGPLGSEMGSSHMG 315
Query: 277 DLLPHDVR-HRHEQHPVCVRRGDRRDHRQQPARLR 378
+ P R ++H Q V R HR RLR
Sbjct: 316 PVQPTGFRIYQHHQRDDSVPVATLRQHRGGVPRLR 350
>At2g46260.1 68415.m05752 BTB/POZ domain-containing protein contains
Pfam PF00651: BTB/POZ domain; contains Interpro
IPR000210/ PS50097: BTBB/POZ domain; similar to POZ/BTB
containing-protein AtPOB1 (GI:12006855) [Arabidopsis
thaliana]; similar to actinfilin (GI:21667852) [Rattus
norvegicus]
Length = 561
Score = 28.3 bits (60), Expect = 4.4
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = +2
Query: 182 CFPEYTGAQEYGEAAAYIQAQFEAKNKSTTKE 277
CF + G QE G + + +F A++KST +E
Sbjct: 472 CFGLFLGMQEKGAVSFGVDYEFAARDKSTKEE 503
>At2g38460.1 68415.m04723 iron transporter-related contains
transmembrane domains; similar to iron-regulated
transporter IREG1 (GI:7264727) [Mus musculus]; similar
to ferroportin1 (GI:7109247) [Mus musculus]
Length = 524
Score = 27.9 bits (59), Expect = 5.8
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = +2
Query: 389 PPRTRRHYYIYLYTAIFISKIKKKT 463
PP RR + IYLY F+++ +T
Sbjct: 30 PPALRRRFVIYLYVGYFLARWSART 54
>At5g44260.1 68418.m05416 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 381
Score = 27.5 bits (58), Expect = 7.7
Identities = 15/39 (38%), Positives = 19/39 (48%)
Frame = +1
Query: 301 HRHEQHPVCVRRGDRRDHRQQPARLRPVLAASHPPPLLH 417
H H + P + GDR QQ + LR L+ S P LH
Sbjct: 284 HHHHRLPPWLDVGDRDLQLQQSSPLRFALSPSSTPSYLH 322
>At2g45100.1 68415.m05613 transcription factor IIB (TFIIB) family
protein contains Pfam domain, PF00382: Transcription
factor TFIIB repeat
Length = 565
Score = 27.5 bits (58), Expect = 7.7
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +1
Query: 544 DQRQSCLICCRILVNYNLSSRIKF 615
D SC +C RIL N+N S+ + F
Sbjct: 18 DAALSCDLCGRILENFNFSTEVTF 41
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,494,200
Number of Sequences: 28952
Number of extensions: 248960
Number of successful extensions: 861
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 834
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 861
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1275599520
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -