Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0627
         (703 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0046 + 425064-425296,426278-426327,426607-426696,426778-42...    31   0.89 
05_05_0267 - 23704249-23704401,23704476-23704780,23704967-237056...    31   0.89 
12_01_0482 - 3791630-3791698,3791983-3792124,3792202-3792344,379...    30   1.5  
08_02_1242 - 25513665-25513997,25514184-25514257,25514317-255144...    30   1.5  
05_01_0084 + 562119-562411,562854-562902,563151-563162,563194-56...    30   1.5  
05_05_0134 + 22619297-22619801,22619879-22621960,22622067-22623718     30   2.0  
03_02_0887 - 12188178-12188224,12188464-12188692                       30   2.0  
09_04_0630 + 19104678-19105463,19106169-19106348,19107775-191078...    29   2.7  
08_02_0746 + 20721421-20721649,20722912-20722971,20723318-207233...    29   3.6  
07_01_0566 + 4207894-4207974,4208090-4208144,4208671-4208759,420...    29   3.6  
06_03_0874 - 25580417-25580419,25580504-25580604,25580828-255814...    29   3.6  
02_04_0492 - 23424745-23425890                                         29   3.6  
01_06_0535 + 30061862-30063388                                         29   3.6  
07_03_1143 - 24294516-24294528,24294656-24297926,24298011-24298056     29   4.7  
05_03_0408 + 13601576-13601748,13601795-13602104,13602597-136028...    29   4.7  
07_03_1305 - 25638531-25638584,25638909-25638990,25639087-256391...    28   8.3  
02_04_0147 + 20194244-20195717,20195953-20195969                       28   8.3  

>06_01_0046 +
           425064-425296,426278-426327,426607-426696,426778-426840,
           427524-427583,428135-428194,428654-428713,429273-429347,
           429559-429602
          Length = 244

 Score = 31.1 bits (67), Expect = 0.89
 Identities = 22/68 (32%), Positives = 30/68 (44%), Gaps = 1/68 (1%)
 Frame = +2

Query: 188 GRKSTTNTTESGMKRPTSLKTNHKSIHSKKNQK-SIHTKMNQKSIHAKKKQKSIHTKMNQ 364
           G KS     ES M    S     K   +   QK  IHTK  Q   +A++KQ+    K N+
Sbjct: 13  GSKSQMEEGESIMSESKSSSRGKKKSKTTSEQKVEIHTKETQHLENAEEKQEEGKIKRNK 72

Query: 365 KSMRPNMN 388
           K+   + N
Sbjct: 73  KAPVQSFN 80


>05_05_0267 -
           23704249-23704401,23704476-23704780,23704967-23705674,
           23707772-23708114,23708300-23708374,23708625-23708675,
           23708747-23708818,23708903-23709042,23709227-23709280,
           23709446-23709553,23709769-23709864,23709946-23710005,
           23710352-23710411,23711699-23711927
          Length = 817

 Score = 31.1 bits (67), Expect = 0.89
 Identities = 18/61 (29%), Positives = 29/61 (47%)
 Frame = +2

Query: 188 GRKSTTNTTESGMKRPTSLKTNHKSIHSKKNQKSIHTKMNQKSIHAKKKQKSIHTKMNQK 367
           G KS      +  +  +S +   KS  + + +  IHTK  Q   + KKKQ+    K N+K
Sbjct: 13  GSKSQMEGESTMSESKSSSRGKKKSKTTSEQKVEIHTKETQNLANTKKKQEEGKIKRNKK 72

Query: 368 S 370
           +
Sbjct: 73  A 73



 Score = 28.3 bits (60), Expect = 6.2
 Identities = 16/61 (26%), Positives = 30/61 (49%)
 Frame = +2

Query: 212 TESGMKRPTSLKTNHKSIHSKKNQKSIHTKMNQKSIHAKKKQKSIHTKMNQKSMRPNMNR 391
           ++S M+  +++  +  S   KK  K+  T   +  IH K+ Q   +TK  Q+  +   N+
Sbjct: 14  SKSQMEGESTMSESKSSSRGKKKSKT--TSEQKVEIHTKETQNLANTKKKQEEGKIKRNK 71

Query: 392 K 394
           K
Sbjct: 72  K 72


>12_01_0482 -
           3791630-3791698,3791983-3792124,3792202-3792344,
           3792833-3792958,3794307-3794444,3794540-3794622,
           3794738-3794825,3796147-3796344
          Length = 328

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 17/59 (28%), Positives = 28/59 (47%)
 Frame = +1

Query: 28  TRD*FAKSGNPIPDENHYLNTNWLPVTNDNLYCLNLNSELTLISNPDQEKMDFWEKIYD 204
           TR    +S       N Y+N +++ VT DN     ++++  L    D    DFWE +Y+
Sbjct: 99  TRVRLKRSTTSQTSSNDYINASFIKVTEDNRVAKFISTQGPLAKTFD----DFWEMVYE 153


>08_02_1242 -
           25513665-25513997,25514184-25514257,25514317-25514422,
           25514507-25514557,25514629-25514700,25514785-25514924,
           25515109-25515162,25515328-25515435,25515652-25515747,
           25515828-25515887,25516234-25516293,25517581-25517809
          Length = 460

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 18/61 (29%), Positives = 29/61 (47%)
 Frame = +2

Query: 188 GRKSTTNTTESGMKRPTSLKTNHKSIHSKKNQKSIHTKMNQKSIHAKKKQKSIHTKMNQK 367
           G KS      +  +  +S +   KS  + + +  IHTK  Q   + KKKQ+    K N+K
Sbjct: 13  GSKSQMEGESTMSESKSSSRGKKKSKTTSEQKVEIHTKETQNLENTKKKQEEGKIKRNKK 72

Query: 368 S 370
           +
Sbjct: 73  A 73


>05_01_0084 +
           562119-562411,562854-562902,563151-563162,563194-563327,
           563716-566278
          Length = 1016

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 17/66 (25%), Positives = 34/66 (51%)
 Frame = +2

Query: 182 TFGRKSTTNTTESGMKRPTSLKTNHKSIHSKKNQKSIHTKMNQKSIHAKKKQKSIHTKMN 361
           ++G  S  NTT + M +PTS + N  + ++ +    ++T MN  ++    +  S++   N
Sbjct: 266 SYGAISAQNTTNANMMQPTS-QLNIMNANTMQPTSQLNT-MNANTMQPTSQLSSLNPNQN 323

Query: 362 QKSMRP 379
           Q+   P
Sbjct: 324 QRFAAP 329


>05_05_0134 + 22619297-22619801,22619879-22621960,22622067-22623718
          Length = 1412

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 21/78 (26%), Positives = 35/78 (44%)
 Frame = +1

Query: 142  ELTLISNPDQEKMDFWEKIYDKHYRIWDETTNQSKNEPQIDTFKKEPEIDTYQNESEIDT 321
            E T +  PD++     + + D      D+ T  + N+P  D   +EP+  T  N+   D 
Sbjct: 1124 EDTTVEAPDEKTKTANDPVEDATVEEPDKKT--AANDPVEDATVEEPDKKTAANDPVEDA 1181

Query: 322  CKKETEIDTYKNEPEIDA 375
              +E +  T  N+P  DA
Sbjct: 1182 TVEEPDKKTAANDPAEDA 1199


>03_02_0887 - 12188178-12188224,12188464-12188692
          Length = 91

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 19/53 (35%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
 Frame = +2

Query: 215 ESGMKRPTSLKTNHKSIHSKKNQK-SIHTKMNQKSIHAKKKQKSIHTKMNQKS 370
           ES M    S     K   +   QK  IHTK  Q   + KKKQ+    K N+K+
Sbjct: 21  ESTMSESKSSSIGKKKSKTTSEQKVEIHTKETQNLENTKKKQEEGKIKRNKKA 73


>09_04_0630 +
           19104678-19105463,19106169-19106348,19107775-19107864,
           19108777-19108958,19109968-19109974,19111763-19111833,
           19112188-19112224,19112433-19112603
          Length = 507

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = -3

Query: 407 ITDTISGSCLGASISGSFLYVSISVSFLHVSISDSFWYVS 288
           + DT   SC    +S  F +VS     +   +SD F+YVS
Sbjct: 271 LRDTREVSCDTCKVSDDFYHVSRDTREISFQVSDDFYYVS 310


>08_02_0746 +
           20721421-20721649,20722912-20722971,20723318-20723377,
           20723458-20723553,20723764-20723871,20724037-20724090,
           20724275-20724414,20724499-20724570,20724642-20724692,
           20724943-20725017,20725205-20725585,20726372-20727604,
           20727679-20727831
          Length = 903

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 18/61 (29%), Positives = 29/61 (47%)
 Frame = +2

Query: 188 GRKSTTNTTESGMKRPTSLKTNHKSIHSKKNQKSIHTKMNQKSIHAKKKQKSIHTKMNQK 367
           G KS      +  +  +S +   KS  + + +  IHTK  Q   + KKKQ+    K N+K
Sbjct: 13  GSKSQMEGESTMSESKSSSRGKKKSKTTFEQKVEIHTKETQNLENTKKKQEEGKIKRNKK 72

Query: 368 S 370
           +
Sbjct: 73  A 73


>07_01_0566 +
           4207894-4207974,4208090-4208144,4208671-4208759,
           4209742-4209794,4209966-4210120,4210201-4210528,
           4210618-4210730,4211394-4211538,4211951-4212259,
           4212340-4212420,4212989-4213349
          Length = 589

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 17/58 (29%), Positives = 26/58 (44%)
 Frame = +2

Query: 197 STTNTTESGMKRPTSLKTNHKSIHSKKNQKSIHTKMNQKSIHAKKKQKSIHTKMNQKS 370
           S+ +T+ S   R    K++ K  H     KS H K  +KS   K+K K  +   +  S
Sbjct: 206 SSLDTSSSSDHRHKRRKSSKKDKHRSAKGKSKHKKTKRKSRGTKRKSKRSYRSSSDDS 263


>06_03_0874 -
           25580417-25580419,25580504-25580604,25580828-25581411,
           25581523-25581594,25581667-25581793,25583412-25583516,
           25583643-25583676
          Length = 341

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 10/39 (25%), Positives = 23/39 (58%)
 Frame = +1

Query: 250 EPQIDTFKKEPEIDTYQNESEIDTCKKETEIDTYKNEPE 366
           +PQ  T+  +P+ +TYQ + + +T   + ++  Y  +P+
Sbjct: 235 QPQGQTYPPQPQGETYQPQPQRETYPPQPQVQPYPPKPQ 273


>02_04_0492 - 23424745-23425890
          Length = 381

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = -1

Query: 268 MYRFVVRF*TGWSFHPRFCSVCRRF 194
           M   V+ +  GWS HP F S CR +
Sbjct: 22  MLVLVLEYRLGWSTHPSFASTCRHW 46


>01_06_0535 + 30061862-30063388
          Length = 508

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 11/29 (37%), Positives = 20/29 (68%)
 Frame = -3

Query: 380 LGASISGSFLYVSISVSFLHVSISDSFWY 294
           + A ++GSF+ ++I  S L+ ++S  FWY
Sbjct: 353 IAAVLNGSFMGLNIVASILNSNLSAQFWY 381


>07_03_1143 - 24294516-24294528,24294656-24297926,24298011-24298056
          Length = 1109

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 12/22 (54%), Positives = 16/22 (72%)
 Frame = -2

Query: 264 IDLWFVFRLVGRFIPDSVVFVV 199
           I LWFVF L+  FI  +VVF++
Sbjct: 714 IALWFVFSLIIAFIAGTVVFIM 735


>05_03_0408 +
           13601576-13601748,13601795-13602104,13602597-13602834,
           13603014-13603364,13603457-13603542,13603685-13603759,
           13604241-13604542,13605359-13605622,13606032-13606806
          Length = 857

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 22/74 (29%), Positives = 31/74 (41%), Gaps = 2/74 (2%)
 Frame = +1

Query: 67  DENHYLNTNWLPVTNDNLYCLNLNSEL-TLISNPDQEKMDFWEKIYD-KHYRIWDETTNQ 240
           D   ++NT++LP        L    EL +L  N   E+ D WE+IYD  +Y       N 
Sbjct: 154 DRVFFINTSYLPDKTPEALRLLREEELRSLRGNGRGERKD-WERIYDFDYYNDLGNPDND 212

Query: 241 SKNEPQIDTFKKEP 282
               P +   K  P
Sbjct: 213 DHVRPVLGGTKTHP 226


>07_03_1305 -
           25638531-25638584,25638909-25638990,25639087-25639169,
           25639252-25639515,25639984-25640060,25640183-25640277,
           25640953-25641065
          Length = 255

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 15/34 (44%), Positives = 20/34 (58%)
 Frame = +1

Query: 562 TLIVTEKTETPEQAPSVKEMILEFSEPAQLESNE 663
           T +V +K+ETPE   S ++   E S  A  ESNE
Sbjct: 137 TSVVEDKSETPEMTASSEKPEEEGSNAATEESNE 170


>02_04_0147 + 20194244-20195717,20195953-20195969
          Length = 496

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 23/79 (29%), Positives = 34/79 (43%), Gaps = 6/79 (7%)
 Frame = +1

Query: 1   WIPRAAGFGTR--D*FAKSGNPIPDENHYLNTNWLPVTNDNLYCLNLNSELTLISNPDQE 174
           W  +AA       D  A+S   IP  N       +PV  D L  +N    +TL+S   Q 
Sbjct: 323 WRAQAASLNVLVFDTVAESFGWIPPPNQQEGNQMIPVEGDQLLEINGRLAMTLVS---QT 379

Query: 175 KMDFW----EKIYDKHYRI 219
            +D W     + ++ HY+I
Sbjct: 380 TVDVWVLQEGEAWEHHYQI 398


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.311    0.130    0.385 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,330,080
Number of Sequences: 37544
Number of extensions: 357546
Number of successful extensions: 924
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 870
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 921
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1803843684
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)