Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0627
(703 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g03130.1 68414.m00290 photosystem I reaction center subunit I... 33 0.18
At4g26630.1 68417.m03837 expressed protein 31 0.56
At5g41780.1 68418.m05087 myosin heavy chain-related weak similar... 31 0.98
At1g18670.1 68414.m02330 protein kinase family protein contains ... 30 1.3
At3g43150.1 68416.m04546 hypothetical protein 29 2.3
At1g09210.1 68414.m01028 calreticulin 2 (CRT2) identical to SP|Q... 29 2.3
At5g41950.1 68418.m05108 expressed protein 29 3.9
At4g10940.1 68417.m01779 PHD finger family protein contains Pfam... 29 3.9
At3g54670.1 68416.m06049 structural maintenance of chromosomes (... 29 3.9
At3g15120.1 68416.m01913 AAA-type ATPase family protein contains... 29 3.9
At5g42390.1 68418.m05161 metalloendopeptidase identical to chlor... 28 6.9
At3g42556.1 68416.m04417 hypothetical protein contains Pfam prof... 28 6.9
At2g42200.2 68415.m05223 squamosa promoter-binding protein-like ... 28 6.9
At1g80790.1 68414.m09479 XH/XS domain-containing protein / XS zi... 28 6.9
At4g17460.1 68417.m02612 homeobox-leucine zipper protein 1 (HAT1... 27 9.1
At2g42200.1 68415.m05222 squamosa promoter-binding protein-like ... 27 9.1
At1g30610.1 68414.m03744 pentatricopeptide (PPR) repeat-containi... 27 9.1
>At1g03130.1 68414.m00290 photosystem I reaction center subunit II,
chloroplast, putative / photosystem I 20 kDa subunit,
putative / PSI-D, putative (PSAD2) similar to SP|P12353
Photosystem I reaction center subunit II, chloroplast
precursor (Photosystem I 20 kDa subunit) (PSI-D)
{Spinacia oleracea}; contains Pfam profile PF02531: PsaD
Length = 204
Score = 33.1 bits (72), Expect = 0.18
Identities = 17/40 (42%), Positives = 25/40 (62%)
Frame = +1
Query: 556 SQTLIVTEKTETPEQAPSVKEMILEFSEPAQLESNEHKPV 675
++T I EKTE+ AP+VKE + F+ P QL+ N P+
Sbjct: 38 TKTAIRAEKTESSSAAPAVKEAPVGFT-PPQLDPNTPSPI 76
>At4g26630.1 68417.m03837 expressed protein
Length = 763
Score = 31.5 bits (68), Expect = 0.56
Identities = 15/71 (21%), Positives = 34/71 (47%)
Frame = +1
Query: 154 ISNPDQEKMDFWEKIYDKHYRIWDETTNQSKNEPQIDTFKKEPEIDTYQNESEIDTCKKE 333
++ PD ++D K D+ D+ + KNE +T K E +++ ++E + + +
Sbjct: 46 MAEPDNMEIDAQIKKDDEKAETEDKESEVKKNEDNAETQKMEEKVEVTKDEGQAEATNMD 105
Query: 334 TEIDTYKNEPE 366
+ D K + +
Sbjct: 106 EDADGKKEQTD 116
>At5g41780.1 68418.m05087 myosin heavy chain-related weak similarity
to M protein, serotype 5 precursor (SP:P02977)
{Streptococcus pyogenes} and to Myosin heavy chain,
non-muscle (SP:Q99323) (Zipper protein) (Myosin II)
{Drosophila melanogaster}
Length = 537
Score = 30.7 bits (66), Expect = 0.98
Identities = 20/73 (27%), Positives = 30/73 (41%)
Frame = +2
Query: 173 RRWTFGRKSTTNTTESGMKRPTSLKTNHKSIHSKKNQKSIHTKMNQKSIHAKKKQKSIHT 352
+RW+FG K TN E M+ H + + IH + IH + K I T
Sbjct: 307 KRWSFGSKLNTNLLEKKMEELAEDFRMKMEDHIRILHRRIHV---AEQIHLESKSSYIKT 363
Query: 353 KMNQKSMRPNMNR 391
+ N ++ NR
Sbjct: 364 RDNTQTEENRGNR 376
>At1g18670.1 68414.m02330 protein kinase family protein contains
Protein kinases ATP-binding region signature,
PROSITE:PS00107 and Serine/Threonine protein kinases
active-site signature, PROSITE:PS00108
Length = 662
Score = 30.3 bits (65), Expect = 1.3
Identities = 20/79 (25%), Positives = 32/79 (40%)
Frame = +2
Query: 173 RRWTFGRKSTTNTTESGMKRPTSLKTNHKSIHSKKNQKSIHTKMNQKSIHAKKKQKSIHT 352
RR T RK T P +H K+N S+H ++ S +K QK +
Sbjct: 457 RRGTESRKPTRKPPAFAKLAPAEDVRHHSQKFQKRNGHSVHNSIDSDSTLFEKMQKPSNH 516
Query: 353 KMNQKSMRPNMNRK*CPLS 409
+ ++ S N ++ P S
Sbjct: 517 EKDEASHVKNASQGDVPFS 535
>At3g43150.1 68416.m04546 hypothetical protein
Length = 194
Score = 29.5 bits (63), Expect = 2.3
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = +1
Query: 157 SNPDQEKMDFWEKIYDKHYRIWDE 228
S +E DF +K+ DKH R++DE
Sbjct: 53 SKDKKEAYDFMDKVVDKHRRLYDE 76
>At1g09210.1 68414.m01028 calreticulin 2 (CRT2) identical to
SP|Q38858 Calreticulin 2 precursor {Arabidopsis
thaliana}
Length = 424
Score = 29.5 bits (63), Expect = 2.3
Identities = 23/93 (24%), Positives = 41/93 (44%), Gaps = 8/93 (8%)
Frame = +1
Query: 130 NLNSELTLISNPDQEKM---DFWEKIYDKHYRIWDETTN-----QSKNEPQIDTFKKEPE 285
+L + + +PD K + W K+ D +DE +SK+ P + EPE
Sbjct: 329 SLFDNVLICDDPDYAKKLADETWGKLKDAEKAAFDEAEKKNEEEESKDAPAESDAEDEPE 388
Query: 286 IDTYQNESEIDTCKKETEIDTYKNEPEIDAPKH 384
D ++S+ ++ +ET+ + E DA H
Sbjct: 389 DDEGGDDSDSESKAEETKSVDSEETSEKDATAH 421
>At5g41950.1 68418.m05108 expressed protein
Length = 565
Score = 28.7 bits (61), Expect = 3.9
Identities = 19/69 (27%), Positives = 34/69 (49%), Gaps = 3/69 (4%)
Frame = +1
Query: 493 IDRAEVETQITTTTLLENNDGSQTLIVTE---KTETPEQAPSVKEMILEFSEPAQLESNE 663
I EVE + TT+ L +++DG++T + E + ++ E + FS + + E
Sbjct: 121 IRSTEVEQESTTSVLKKDDDGNKTFTMRELLSELKSEEGDGTPHSSASPFSRESASQPAE 180
Query: 664 HKPVNDHIN 690
+ P D IN
Sbjct: 181 NNPAMDLIN 189
>At4g10940.1 68417.m01779 PHD finger family protein contains Pfam
profile: PF00097 zinc finger, C3HC4 type
Length = 192
Score = 28.7 bits (61), Expect = 3.9
Identities = 10/16 (62%), Positives = 10/16 (62%)
Frame = -2
Query: 300 LVCIDFWFFFECIDLW 253
L C WF FECID W
Sbjct: 44 LDCCQHWFCFECIDNW 59
>At3g54670.1 68416.m06049 structural maintenance of chromosomes
(SMC) family protein similar to SMC1 protein [Bos
taurus] GI:4235253, 14S cohesin SMC1 subunit (SMC
protein) [Xenopus laevis] GI:3328231; contains Pfam
profiles PF02483: SMC family C-terminal domain, PF02463:
RecF/RecN/SMC N terminal domain
Length = 1257
Score = 28.7 bits (61), Expect = 3.9
Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 3/46 (6%)
Frame = +2
Query: 242 LKTNHKSIHSKKNQKSIHTK---MNQKSIHAKKKQKSIHTKMNQKS 370
++TN K + +K +K H+K QKSI K+ + K Q S
Sbjct: 322 IETNRKDVDKRKKEKGKHSKEIEQMQKSIKELNKKMELFNKKRQDS 367
>At3g15120.1 68416.m01913 AAA-type ATPase family protein contains
PROSITE domains, PS00674: AAA-protein family signature
and PS00017: ATP/GTP-binding site motif A (P-loop)
Length = 1954
Score = 28.7 bits (61), Expect = 3.9
Identities = 13/37 (35%), Positives = 22/37 (59%)
Frame = +1
Query: 238 QSKNEPQIDTFKKEPEIDTYQNESEIDTCKKETEIDT 348
+S+NE ++D + E E T ++EID +E E +T
Sbjct: 238 ESENEAEVDRTETESEDGTDSTDNEIDDSDEEGESET 274
>At5g42390.1 68418.m05161 metalloendopeptidase identical to
chloroplast processing enzyme metalloendopeptidase
[Arabidopsis thaliana] gi|2827039|gb|AAC39482
Length = 1265
Score = 27.9 bits (59), Expect = 6.9
Identities = 12/42 (28%), Positives = 23/42 (54%)
Frame = +1
Query: 508 VETQITTTTLLENNDGSQTLIVTEKTETPEQAPSVKEMILEF 633
+E+ + T+++ G +TL+ T T E+ +V +LEF
Sbjct: 622 MESDALSHTVMDQTQGHETLVAVAGTVTLEEVNTVGAKVLEF 663
>At3g42556.1 68416.m04417 hypothetical protein contains Pfam profile
PF03778: Protein of unknown function (DUF321)
Length = 113
Score = 27.9 bits (59), Expect = 6.9
Identities = 18/48 (37%), Positives = 20/48 (41%)
Frame = -1
Query: 394 FPVHVWAHRFLVHFCMYRFLFLFCMYRFLIHFGMYRFLVLF*MYRFVV 251
F V H F+V Y F L Y F + G Y F VL Y F V
Sbjct: 12 FNVLAGKHDFVVLTGKYNFTVLAGKYDFTVLAGKYDFTVLVGKYDFTV 59
>At2g42200.2 68415.m05223 squamosa promoter-binding protein-like 9
(SPL9) identical to squamosa promoter binding
protein-like 9 [Arabidopsis thaliana] GI:5931673;
contains Pfam profile PF03110: SBP domain
Length = 369
Score = 27.9 bits (59), Expect = 6.9
Identities = 16/50 (32%), Positives = 23/50 (46%)
Frame = +1
Query: 13 AAGFGTRD*FAKSGNPIPDENHYLNTNWLPVTNDNLYCLNLNSELTLISN 162
++GFG P P ++ YLN W+ NDN LN + IS+
Sbjct: 280 SSGFGPMTVTMAQPPPAPSQHQYLNPPWVFKDNDNDMSPVLNLDNCQISS 329
>At1g80790.1 68414.m09479 XH/XS domain-containing protein / XS zinc
finger domain-containing protein contains Pfam domains
PF03469: XH domain, PF03468: XS domain and PF03470: XS
zinc finger domain
Length = 634
Score = 27.9 bits (59), Expect = 6.9
Identities = 19/72 (26%), Positives = 40/72 (55%), Gaps = 1/72 (1%)
Frame = +1
Query: 133 LNSELTLISNPDQEKMDFWEKIYDKHYRIWDETTNQ-SKNEPQIDTFKKEPEIDTYQNES 309
+NS L L S ++ D ++ D+H R +ET N+ + E ++D+ K++ +++ + +
Sbjct: 365 MNSSLQLASLEQKKTDDRVLRLVDEHKRKKEETLNKILQLEKELDS-KQKLQMEIQELKG 423
Query: 310 EIDTCKKETEID 345
++ K E E D
Sbjct: 424 KLKVMKHEDEDD 435
>At4g17460.1 68417.m02612 homeobox-leucine zipper protein 1 (HAT1) /
HD-ZIP protein 1 identical to Homeobox-leucine zipper
protein HAT1 (SP:P46600) [Arabidopsis thaliana]
Length = 282
Score = 27.5 bits (58), Expect = 9.1
Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
Frame = +1
Query: 70 ENHYLNTNWLPVTN--DNLYCLNLNSELTLISNPDQEKMDFWEKI 198
+NH L N P ++ NL N TL+S+ DQ+K F KI
Sbjct: 18 QNHPLQLNLKPTSSPMSNLQMFPWNQ--TLVSSSDQQKQQFLRKI 60
>At2g42200.1 68415.m05222 squamosa promoter-binding protein-like 9
(SPL9) identical to squamosa promoter binding
protein-like 9 [Arabidopsis thaliana] GI:5931673;
contains Pfam profile PF03110: SBP domain
Length = 375
Score = 27.5 bits (58), Expect = 9.1
Identities = 12/35 (34%), Positives = 17/35 (48%)
Frame = +1
Query: 13 AAGFGTRD*FAKSGNPIPDENHYLNTNWLPVTNDN 117
++GFG P P ++ YLN W+ NDN
Sbjct: 280 SSGFGPMTVTMAQPPPAPSQHQYLNPPWVFKDNDN 314
>At1g30610.1 68414.m03744 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 1006
Score = 27.5 bits (58), Expect = 9.1
Identities = 13/56 (23%), Positives = 31/56 (55%)
Frame = +1
Query: 118 LYCLNLNSELTLISNPDQEKMDFWEKIYDKHYRIWDETTNQSKNEPQIDTFKKEPE 285
++CLNLN++ + P + +F + +D++ +I E+ ++ + + D K E +
Sbjct: 51 MFCLNLNTKEVGLQKPGDKGFEF-KPSFDQYLQIM-ESVKTARKKKKFDRLKVEED 104
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.311 0.130 0.385
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,209,381
Number of Sequences: 28952
Number of extensions: 313332
Number of successful extensions: 920
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 866
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 916
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1506636208
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
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