Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0625
         (560 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC890.04c |||ribosome biogenesis protein Ytm1 |Schizosaccharom...    27   1.9  
SPAC8C9.04 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    27   2.5  
SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha...    27   2.5  
SPAP14E8.04 |oma1||metallopeptidase Oma1 |Schizosaccharomyces po...    27   2.5  
SPAC2F3.09 |hem1||5-aminolevulinate synthase|Schizosaccharomyces...    26   3.3  
SPBC1306.01c ||SPBC409.22c|translation elongation factor G|Schiz...    25   5.8  
SPBC6B1.02 |ppk30||Ark1/Prk1 family protein kinase Ppk30|Schizos...    25   7.6  
SPBC800.13 |||histone H4 variant|Schizosaccharomyces pombe|chr 2...    25   7.6  

>SPAC890.04c |||ribosome biogenesis protein Ytm1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 440

 Score = 27.1 bits (57), Expect = 1.9
 Identities = 12/27 (44%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
 Frame = +2

Query: 119 GLALSWSNNGEDRFMSRGC-FTLKAAA 196
           G+A  W  +GE +F S GC  +LK+A+
Sbjct: 124 GIARVWDKSGEIKFQSTGCGSSLKSAS 150


>SPAC8C9.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 647

 Score = 26.6 bits (56), Expect = 2.5
 Identities = 12/46 (26%), Positives = 23/46 (50%)
 Frame = -2

Query: 517 RMGPMLASCTASTSEDGRAQPSGSLSTSRGSCT*RPFTPSQVPMPQ 380
           ++G   AS T+  +    AQPS  +  +    T +P T ++  +P+
Sbjct: 193 QLGNSPASITSKPATTSAAQPSSKVEENMAKATSQPITTAEKEIPE 238


>SPBC23E6.09 |ssn6||transcriptional corepressor
           Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1102

 Score = 26.6 bits (56), Expect = 2.5
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = -1

Query: 542 P*PAQQTVQNGPNVGELHGQHQRGRQGPALGQPLDEQR 429
           P P QQ  Q+ P       QHQ+ +Q     QPL +Q+
Sbjct: 163 PVPLQQQQQSQPQQQPQQQQHQQPQQPQPPQQPLQQQQ 200


>SPAP14E8.04 |oma1||metallopeptidase Oma1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 337

 Score = 26.6 bits (56), Expect = 2.5
 Identities = 17/57 (29%), Positives = 26/57 (45%)
 Frame = +2

Query: 161 MSRGCFTLKAAARGGVRTWPAQSPSTLVVGCATSHPQVKRR*RNIPVSRQRRRLQRE 331
           MS+ CF   AA     R   A+      +  A++HP  K+R R I       +++RE
Sbjct: 261 MSQACFDPNAAKTLWERMDAAEGQMGKALAFASTHPSSKKRIRKIEEWLPEAQVKRE 317


>SPAC2F3.09 |hem1||5-aminolevulinate synthase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 558

 Score = 26.2 bits (55), Expect = 3.3
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +2

Query: 500 QHWAHSVRSAGPATAPRF 553
           +H+A  +   GPAT PRF
Sbjct: 115 KHYASDLNGVGPATTPRF 132


>SPBC1306.01c ||SPBC409.22c|translation elongation factor
           G|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 770

 Score = 25.4 bits (53), Expect = 5.8
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = +3

Query: 174 VSR*RRQHAVVCGHGQPRVRQHSWLAAPLPTHRLNE 281
           V R RR++ V C  G+PRV     L+  +P   L++
Sbjct: 529 VERMRREYKVDCETGKPRVAFRETLSKKVPFSYLHK 564


>SPBC6B1.02 |ppk30||Ark1/Prk1 family protein kinase
           Ppk30|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 953

 Score = 25.0 bits (52), Expect = 7.6
 Identities = 18/70 (25%), Positives = 31/70 (44%)
 Frame = -2

Query: 523 PYRMGPMLASCTASTSEDGRAQPSGSLSTSRGSCT*RPFTPSQVPMPQQMSSTSSVTRL* 344
           P ++  +     AST    RA    + S S    + RP   S  P+P   +++S+V  + 
Sbjct: 331 PLKLPDVYGGVNASTYNPPRAPLQRTPSGSLTPLSSRPAHTSLPPIPTVQTTSSNVPPVN 390

Query: 343 APHILTLKPS 314
            P + +  PS
Sbjct: 391 RPSLKSKSPS 400


>SPBC800.13 |||histone H4 variant|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 479

 Score = 25.0 bits (52), Expect = 7.6
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +1

Query: 253 RHFPPTG*TKIKKYPRVSSKKK 318
           RH P T   K +K PR+SS K+
Sbjct: 99  RHTPQTNSQKSQKTPRLSSNKR 120


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,326,609
Number of Sequences: 5004
Number of extensions: 47216
Number of successful extensions: 124
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 124
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 236012634
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)