Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0625
         (560 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0256 + 27201483-27202499,27203297-27203375,27204617-272049...    32   0.27 
03_02_0282 + 7074745-7074963,7075050-7075241,7075339-7075932           31   0.83 
01_07_0331 + 42804385-42804659,42806175-42806340,42806424-428065...    30   1.5  
06_01_0842 + 6383033-6383430,6383548-6383627,6383974-6384085,638...    29   1.9  
12_01_0874 + 8384332-8384657,8385447-8386044                           28   4.4  
07_03_1387 + 26202975-26203274,26203363-26203449,26203541-262036...    28   4.4  
11_01_0651 - 5272442-5272718,5274026-5274081                           28   5.9  
10_02_0054 + 4612464-4612823                                           28   5.9  
06_03_0362 - 19882947-19883168,19883705-19883854                       28   5.9  
06_01_0019 + 208204-208533,208642-208844,208969-209107                 28   5.9  
04_03_0398 - 15393102-15393378,15394685-15394740                       28   5.9  
03_05_0069 - 20466717-20467373,20470285-20471247                       27   7.7  

>02_05_0256 +
           27201483-27202499,27203297-27203375,27204617-27204946,
           27205029-27205198
          Length = 531

 Score = 32.3 bits (70), Expect = 0.27
 Identities = 25/78 (32%), Positives = 37/78 (47%), Gaps = 3/78 (3%)
 Frame = -2

Query: 532 PSRPYRMGPMLASCTASTSEDGRAQPSGSLSTSRGSCT*R---PFTPSQVPMPQQMSSTS 362
           P+    +   +A  TA+ +    A  SG  S S  + T R     TP  +P P + ++ S
Sbjct: 182 PADGTALAAAIADATAAVASASAAVFSGVSSLSIAAATARVEVAATPCWMPSPARFTTPS 241

Query: 361 SVTRL*APHILTLKPSSL 308
           +  R    HI+T KPSSL
Sbjct: 242 ATPR---HHIITTKPSSL 256


>03_02_0282 + 7074745-7074963,7075050-7075241,7075339-7075932
          Length = 334

 Score = 30.7 bits (66), Expect = 0.83
 Identities = 13/36 (36%), Positives = 17/36 (47%)
 Frame = +2

Query: 173 CFTLKAAARGGVRTWPAQSPSTLVVGCATSHPQVKR 280
           C  +  AA GG   WP  SPS     C + +  V+R
Sbjct: 11  CALVVLAAAGGASAWPVMSPSYYEASCPSVYDIVRR 46


>01_07_0331 +
           42804385-42804659,42806175-42806340,42806424-42806549,
           42807142-42807207,42807645-42807698,42808843-42809019,
           42809100-42809102
          Length = 288

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 19/58 (32%), Positives = 26/58 (44%), Gaps = 2/58 (3%)
 Frame = -1

Query: 461 PALGQPLDEQR*LHVETVHSEPGADAPTDEQHIERHASLSAPHPHVEA--FFFDETRG 294
           P+ G+P    R    +    E G  A  D  H    A+ +APHP   A  F+FD  +G
Sbjct: 10  PSAGRPPSSGRGRADDADEREEGEIADDDSGHAPPQANPAAPHPLEHAWTFWFDNPQG 67


>06_01_0842 +
           6383033-6383430,6383548-6383627,6383974-6384085,
           6384355-6384454,6384682-6384744,6385857-6386011,
           6386109-6386286,6386787-6386954
          Length = 417

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
 Frame = -3

Query: 261 EVAQPTTSVDGLWAGHVRTPPRAA-AFSVKQPRLMNRSSP 145
           +  +P    D  W  +   PPR + A S+ QPR +NR+ P
Sbjct: 2   DAVRPLQPADREWPPNPTKPPRLSLATSICQPRYINRTKP 41


>12_01_0874 + 8384332-8384657,8385447-8386044
          Length = 307

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 21/73 (28%), Positives = 32/73 (43%), Gaps = 6/73 (8%)
 Frame = +2

Query: 173 CFTLKAAARGGVRTWPAQSPSTLVVGCATSHPQVKRR*RNIPVSRQRRRLQREDVGR--- 343
           C+   +A        P   P  + +  +TSH        ++   RQR+R  R+D GR   
Sbjct: 73  CYKAASAPEDSATKPPWAMPHRVPINDSTSHAS-SHNDGSVDGDRQRQRRLRDDEGRQRA 131

Query: 344 ---SKTRDARCAA 373
              ++TRD R AA
Sbjct: 132 ARVARTRDRRLAA 144


>07_03_1387 +
           26202975-26203274,26203363-26203449,26203541-26203648,
           26203708-26203980,26205242-26205355,26205900-26206268
          Length = 416

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 21/63 (33%), Positives = 28/63 (44%), Gaps = 4/63 (6%)
 Frame = +2

Query: 188 AAARGGVRTWPAQSPSTLVVGCATSHPQVKRR*RN--IPVSRQRRRLQREDVGRSK--TR 355
           + ARGG R W A S       C+ +  QV+ R      P + +RRR  R     +K    
Sbjct: 13  STARGGHRPWTAASRGVSARRCSVAPAQVRARGPTEWWPAAARRRRAPRRHAVAAKAGAA 72

Query: 356 DAR 364
           DAR
Sbjct: 73  DAR 75


>11_01_0651 - 5272442-5272718,5274026-5274081
          Length = 110

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 15/43 (34%), Positives = 21/43 (48%)
 Frame = -1

Query: 485 QHQRGRQGPALGQPLDEQR*LHVETVHSEPGADAPTDEQHIER 357
           Q  R R+   L  P D+ +  HV  V  EP  D PT ++  +R
Sbjct: 67  QAGRPRRRRRLDDPADDGQSKHVAPVEVEPQQDRPTPDEKSKR 109


>10_02_0054 + 4612464-4612823
          Length = 119

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 23/66 (34%), Positives = 29/66 (43%), Gaps = 2/66 (3%)
 Frame = +2

Query: 194 ARGGVRTWPAQSPSTLVVGCATSHPQVKRR*RNIPVSRQ--RRRLQREDVGRSKTRDARC 367
           AR  VR    Q P  L  G      ++     N+P   Q  RR+L+RED  R        
Sbjct: 27  ARATVRQEHGQRPLRLPSGSGRRQLRLSS---NVPAGNQLRRRQLRREDRARHYVWGHGD 83

Query: 368 AAHLLG 385
           +AHLLG
Sbjct: 84  SAHLLG 89


>06_03_0362 - 19882947-19883168,19883705-19883854
          Length = 123

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
 Frame = +2

Query: 182 LKAAARGGVRTWPAQSPSTLVVGCATS--HPQVKRR*RNIPVSRQRRRLQREDVGRSKT 352
           L A      R++P+ SPS+  V C       ++K R + +P   Q   LQ E V  S+T
Sbjct: 24  LNAKKNDATRSFPSLSPSSSFVSCLREGMASKLKTRKKLLPQQPQVASLQVEAVAASET 82


>06_01_0019 + 208204-208533,208642-208844,208969-209107
          Length = 223

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 16/48 (33%), Positives = 21/48 (43%)
 Frame = -3

Query: 216 HVRTPPRAAAFSVKQPRLMNRSSPLLLHDNARPHTARVAVLTLQEPGL 73
           H   PP  A  S++Q        P LL   A P+TA  A + +  P L
Sbjct: 104 HAAPPPPPATCSLQQRGEGEELLPTLLSATATPNTATAAPMAMPPPPL 151


>04_03_0398 - 15393102-15393378,15394685-15394740
          Length = 110

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 15/43 (34%), Positives = 21/43 (48%)
 Frame = -1

Query: 485 QHQRGRQGPALGQPLDEQR*LHVETVHSEPGADAPTDEQHIER 357
           Q  R R+   L  P D+ +  HV  V  EP  D PT ++  +R
Sbjct: 67  QAGRPRRRRRLDDPADDGQSKHVAPVEVEPQQDRPTPDEKSKR 109


>03_05_0069 - 20466717-20467373,20470285-20471247
          Length = 539

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = -1

Query: 296 GYFFIFV*PVGGKWRSQPRVLTDSGLAMSAHHRV 195
           GY    + P G +WR   RVLT   L+ +  HR+
Sbjct: 120 GYRSASISPHGDQWRKMRRVLTAEILSPATEHRL 153


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,100,745
Number of Sequences: 37544
Number of extensions: 386805
Number of successful extensions: 1177
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1177
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1281410928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)