Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0625
(560 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_56068| Best HMM Match : No HMM Matches (HMM E-Value=.) 73 1e-13
SB_811| Best HMM Match : DUF1011 (HMM E-Value=3.6e-25) 73 2e-13
SB_7132| Best HMM Match : PT (HMM E-Value=2) 31 0.64
SB_56900| Best HMM Match : I-set (HMM E-Value=8e-10) 30 1.1
SB_3036| Best HMM Match : Metallothionein (HMM E-Value=0.81) 30 1.1
SB_37432| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.0
SB_12543| Best HMM Match : TSP_1 (HMM E-Value=1.4e-07) 29 2.6
SB_19713| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.4
SB_4831| Best HMM Match : E-MAP-115 (HMM E-Value=1.8) 28 4.5
SB_43495| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.0
SB_42301| Best HMM Match : Keratin_B2 (HMM E-Value=1.2) 27 7.9
SB_28997| Best HMM Match : rve (HMM E-Value=2.3e-10) 27 7.9
SB_26951| Best HMM Match : CUB (HMM E-Value=0) 27 7.9
SB_3288| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.9
SB_30423| Best HMM Match : Filament (HMM E-Value=3.3) 27 7.9
>SB_56068| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 339
Score = 73.3 bits (172), Expect = 1e-13
Identities = 30/52 (57%), Positives = 42/52 (80%), Gaps = 1/52 (1%)
Frame = +3
Query: 372 LIC-WGIGTWLGVNGLYVQLPLLVERLPEGWALPSSLVLAVQLANIGPILYG 524
L+C +GIG+W+ +NG++V+LP+ V+ PE W LPS L + VQLANIGPI+YG
Sbjct: 21 LVCLFGIGSWVALNGIWVELPIFVKHAPEAWNLPSYLAIIVQLANIGPIVYG 72
>SB_811| Best HMM Match : DUF1011 (HMM E-Value=3.6e-25)
Length = 419
Score = 72.5 bits (170), Expect = 2e-13
Identities = 28/55 (50%), Positives = 42/55 (76%)
Frame = +3
Query: 381 WGIGTWLGVNGLYVQLPLLVERLPEGWALPSSLVLAVQLANIGPILYGLLGRLRP 545
+GIG W+ VNGL+V+LP++V+ +PE W+LPS L + +QLANIGP+ + L + P
Sbjct: 3 FGIGAWIAVNGLWVELPIIVQEIPESWSLPSYLTVIIQLANIGPLAFTLGNKFLP 57
>SB_7132| Best HMM Match : PT (HMM E-Value=2)
Length = 204
Score = 31.1 bits (67), Expect = 0.64
Identities = 17/44 (38%), Positives = 24/44 (54%)
Frame = +3
Query: 390 GTWLGVNGLYVQLPLLVERLPEGWALPSSLVLAVQLANIGPILY 521
G W G N YV LP L R+ E A SS++ + + + G +LY
Sbjct: 3 GLWNGTNLTYVSLP-LTARVRETLATISSIIAVLCILSNGTVLY 45
>SB_56900| Best HMM Match : I-set (HMM E-Value=8e-10)
Length = 968
Score = 30.3 bits (65), Expect = 1.1
Identities = 13/35 (37%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Frame = -1
Query: 422 HVETVHS-EPGADAPTDEQHIERHASLSAPHPHVE 321
H+E H+ P A +PT H H +L A + H E
Sbjct: 361 HIEYTHAYTPSAPSPTHRVHTRLHTNLHAQYTHAE 395
>SB_3036| Best HMM Match : Metallothionein (HMM E-Value=0.81)
Length = 597
Score = 30.3 bits (65), Expect = 1.1
Identities = 17/46 (36%), Positives = 20/46 (43%), Gaps = 1/46 (2%)
Frame = +3
Query: 204 VCGHGQPRVRQHSWLAAPLPTHRLNEDKEISPCLVKEEGFN-VRMW 338
+ G + RQ S A PLPTHR + S EG N V W
Sbjct: 494 IAGASESATRQRSARARPLPTHRSGNSRPNSRKTSNSEGVNTVNNW 539
>SB_37432| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1006
Score = 29.5 bits (63), Expect = 2.0
Identities = 15/55 (27%), Positives = 33/55 (60%), Gaps = 1/55 (1%)
Frame = +3
Query: 213 HGQPRVRQHSWLAAPLPTHRLNEDKEISPCLVKEEG-FNVRMWGAQRRVTLDVLL 374
HG+PR ++P+P + NE ++ +P K +G FN+ ++ +R++ ++ L+
Sbjct: 258 HGKPRKSPRR--SSPVPENAPNEPED-TPLTTKRKGRFNIALYSKRRKLIMEELV 309
>SB_12543| Best HMM Match : TSP_1 (HMM E-Value=1.4e-07)
Length = 379
Score = 29.1 bits (62), Expect = 2.6
Identities = 14/29 (48%), Positives = 17/29 (58%), Gaps = 2/29 (6%)
Frame = -2
Query: 265 VGSGAANHEC*RTLGW--PCPHTTACCRL 185
VGSG C R L PCP+TT+ CR+
Sbjct: 140 VGSGKTKSLCSRELDLCGPCPNTTSACRV 168
>SB_19713| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 507
Score = 28.7 bits (61), Expect = 3.4
Identities = 13/27 (48%), Positives = 17/27 (62%)
Frame = -1
Query: 389 DAPTDEQHIERHASLSAPHPHVEAFFF 309
DAP +E H ER +L AP P ++ FF
Sbjct: 307 DAPDNEMHAERILTLQAP-PRIDTEFF 332
>SB_4831| Best HMM Match : E-MAP-115 (HMM E-Value=1.8)
Length = 1151
Score = 28.3 bits (60), Expect = 4.5
Identities = 21/64 (32%), Positives = 26/64 (40%)
Frame = -2
Query: 544 GRSRPSRPYRMGPMLASCTASTSEDGRAQPSGSLSTSRGSCT*RPFTPSQVPMPQQMSST 365
G RP+ G A + S G +PS S S SCT T S+ PQ +
Sbjct: 992 GNKRPNPVEESGRSSAK-SKSRRNSGPQRPSASSLASGSSCTDNLQTISEFSSPQMTRRS 1050
Query: 364 SSVT 353
SVT
Sbjct: 1051 RSVT 1054
>SB_43495| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1994
Score = 27.9 bits (59), Expect = 6.0
Identities = 14/47 (29%), Positives = 24/47 (51%)
Frame = -2
Query: 496 SCTASTSEDGRAQPSGSLSTSRGSCT*RPFTPSQVPMPQQMSSTSSV 356
+ T +T+ +PS SL+ S P+ +P+ Q +STS+V
Sbjct: 1068 TATPATTTSEVLEPSPSLTLSSSEAASSTLPPTSLPVAQSSTSTSTV 1114
>SB_42301| Best HMM Match : Keratin_B2 (HMM E-Value=1.2)
Length = 600
Score = 27.5 bits (58), Expect = 7.9
Identities = 16/46 (34%), Positives = 24/46 (52%)
Frame = +2
Query: 227 SPSTLVVGCATSHPQVKRR*RNIPVSRQRRRLQREDVGRSKTRDAR 364
SPS C+ HP R VS+QRR+ +R++V SK + +
Sbjct: 88 SPSWTSGSCSNGHPPGTRNYGEEEVSKQRRK-RRKNVRNSKEENGQ 132
>SB_28997| Best HMM Match : rve (HMM E-Value=2.3e-10)
Length = 1847
Score = 27.5 bits (58), Expect = 7.9
Identities = 15/54 (27%), Positives = 24/54 (44%)
Frame = -1
Query: 491 HGQHQRGRQGPALGQPLDEQR*LHVETVHSEPGADAPTDEQHIERHASLSAPHP 330
H H+ R+ PA D+ + + PGA+A T E+ +R + P P
Sbjct: 948 HSYHRSIRRAPAEVVTPDDAQDVWATLYPEAPGAEAITGERETKRERKKTKPSP 1001
>SB_26951| Best HMM Match : CUB (HMM E-Value=0)
Length = 794
Score = 27.5 bits (58), Expect = 7.9
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = -3
Query: 297 GIFLYLRLTCGWEVAQPTTSV 235
GI + R TCGW+V P SV
Sbjct: 83 GIPQHYRATCGWQVTGPADSV 103
>SB_3288| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 352
Score = 27.5 bits (58), Expect = 7.9
Identities = 17/56 (30%), Positives = 24/56 (42%)
Frame = +2
Query: 218 PAQSPSTLVVGCATSHPQVKRR*RNIPVSRQRRRLQREDVGRSKTRDARCAAHLLG 385
PA++PSTLV + P R V RR + + R+K R H+ G
Sbjct: 43 PARTPSTLVERITSPEPPATRPKHPGRVEAGRRLAKWNRLNRAKKETLRVVQHVAG 98
>SB_30423| Best HMM Match : Filament (HMM E-Value=3.3)
Length = 355
Score = 27.5 bits (58), Expect = 7.9
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = +2
Query: 242 VVGCATSHPQVKRR*RNIPVSRQRRRLQREDVG 340
+ GC P++K R++ RQRR+L ED G
Sbjct: 192 IKGCDDVEPKLKTYQRDLDQPRQRRQLFNEDGG 224
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,679,642
Number of Sequences: 59808
Number of extensions: 403877
Number of successful extensions: 1293
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1203
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1292
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1312894764
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -