Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0625
         (560 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g30710.2 68417.m04353 expressed protein contains Pfam domain,...    33   0.17 
At4g30710.1 68417.m04352 expressed protein contains Pfam domain,...    33   0.17 
At5g02800.1 68418.m00222 protein kinase family protein contains ...    29   1.6  
At2g31510.1 68415.m03850 IBR domain-containing protein / ARIADNE...    28   3.7  
At2g43900.1 68415.m05457 endonuclease/exonuclease/phosphatase fa...    28   4.9  
At2g31830.1 68415.m03887 endonuclease/exonuclease/phosphatase fa...    28   4.9  
At4g28640.1 68417.m04094 auxin-responsive protein / indoleacetic...    27   6.5  
At3g28790.1 68416.m03593 expressed protein                             27   6.5  
At2g43800.1 68415.m05445 formin homology 2 domain-containing pro...    27   6.5  
At1g05630.1 68414.m00584 endonuclease/exonuclease/phosphatase fa...    27   6.5  
At3g28300.1 68416.m03535 integrin-related protein 14a identical ...    27   8.6  
At3g28290.1 68416.m03533 integrin-related protein 14a identical ...    27   8.6  
At3g23550.1 68416.m02963 MATE efflux family protein similar to r...    27   8.6  

>At4g30710.2 68417.m04353 expressed protein contains Pfam domain,
           PF04484: Family of unknown function (DUF566)
          Length = 644

 Score = 32.7 bits (71), Expect = 0.17
 Identities = 24/78 (30%), Positives = 35/78 (44%), Gaps = 1/78 (1%)
 Frame = -2

Query: 538 SRPSRPYRMGPMLASCTASTSEDGRA-QPSGSLSTSRGSCT*RPFTPSQVPMPQQMSSTS 362
           SRP+ P R   + +S  +      R   PS  LS SRG    R  +PS+   P + ++TS
Sbjct: 320 SRPASPSRTSFLSSSSISRGMSTSRGVSPSRGLSPSRGLSPTRGLSPSRGLSPSRGTNTS 379

Query: 361 SVTRL*APHILTLKPSSL 308
              R   P    + PS +
Sbjct: 380 CFARPSTPPSRGISPSRI 397


>At4g30710.1 68417.m04352 expressed protein contains Pfam domain,
           PF04484: Family of unknown function (DUF566)
          Length = 644

 Score = 32.7 bits (71), Expect = 0.17
 Identities = 24/78 (30%), Positives = 35/78 (44%), Gaps = 1/78 (1%)
 Frame = -2

Query: 538 SRPSRPYRMGPMLASCTASTSEDGRA-QPSGSLSTSRGSCT*RPFTPSQVPMPQQMSSTS 362
           SRP+ P R   + +S  +      R   PS  LS SRG    R  +PS+   P + ++TS
Sbjct: 320 SRPASPSRTSFLSSSSISRGMSTSRGVSPSRGLSPSRGLSPTRGLSPSRGLSPSRGTNTS 379

Query: 361 SVTRL*APHILTLKPSSL 308
              R   P    + PS +
Sbjct: 380 CFARPSTPPSRGISPSRI 397


>At5g02800.1 68418.m00222 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 378

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 15/45 (33%), Positives = 26/45 (57%)
 Frame = -2

Query: 559 ESEAWGRSRPSRPYRMGPMLASCTASTSEDGRAQPSGSLSTSRGS 425
           +S    ++R +  +++    + C+ STSE  RA+ S S S S+GS
Sbjct: 9   KSSGRNKTRRNGDHKLDRKSSDCSVSTSEKSRAKSSLSESKSKGS 53


>At2g31510.1 68415.m03850 IBR domain-containing protein /
           ARIADNE-like protein ARI7 (ARI7) identical to
           ARIADNE-like protein ARI7 [Arabidopsis thaliana]
           GI:29125028; contains similarity to Swiss-Prot:Q94981
           ariadne-1 protein (Ari-1) [Drosophila melanogaster];
           contains Pfam profile PF01485: IBR domain
          Length = 562

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 8/10 (80%), Positives = 8/10 (80%)
 Frame = +1

Query: 511 PFCTVCWAGY 540
           PFCT CW GY
Sbjct: 157 PFCTTCWTGY 166


>At2g43900.1 68415.m05457 endonuclease/exonuclease/phosphatase
           family protein belongs to Pfam:PF03372:
           Endonuclease/Exonuclease/phosphatase family; contains 3
           WD-40 repeats (PF00400);similar to Type II
           inositol-1,4,5-trisphosphate 5-phosphatase EC 3.1.3.56
           (5PTASE) (INPP5B) (SP:P32019) [Homo sapiens]
          Length = 1305

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 20/79 (25%), Positives = 29/79 (36%), Gaps = 2/79 (2%)
 Frame = +2

Query: 11  RHEVCSLLYQSQFY*SLVTGVKPGSCRVKTATRAV*GLALSW--SNNGEDRFMSRGCFTL 184
           RH  C++L    F   +  G   G  ++         L   W   NN   +  +   +  
Sbjct: 480 RHHQCAVLCFCTFGERIYIGYVSGHIQIIDLEG---NLIAGWVAHNNAVIKMAAADGYIF 536

Query: 185 KAAARGGVRTWPAQSPSTL 241
             A  GG+R WP  SP  L
Sbjct: 537 SLATHGGIRGWPVISPGPL 555


>At2g31830.1 68415.m03887 endonuclease/exonuclease/phosphatase
           family protein belongs to Pfam:PF03372:
           Endonuclease/Exonuclease/phosphatase family; contains 4
           WD-40 repeats (PF00400);similar to SP:Q01968 Inositol
           polyphosphate 5-phosphatase OCRL-1 (EC 3.1.3.-)(Lowe's
           oculocerebrorenal syndrome protein) (SP:Q01968) [Homo
           sapiens]
          Length = 1144

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 15/42 (35%), Positives = 19/42 (45%), Gaps = 2/42 (4%)
 Frame = +2

Query: 122 LALSWSNNGED--RFMSRGCFTLKAAARGGVRTWPAQSPSTL 241
           L  SW ++ E   +  + G F    A  GGVR W   SP  L
Sbjct: 518 LIASWVSHNEPVIKLAAGGGFIFSLATHGGVRGWYVTSPGPL 559


>At4g28640.1 68417.m04094 auxin-responsive protein / indoleacetic
           acid-induced protein 11 (IAA11) identical to SP|Q38829
           Auxin-responsive protein IAA11 (Indoleacetic
           acid-induced protein 11) {Arabidopsis thaliana}
          Length = 246

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = -2

Query: 532 PSRPYRMGPMLASCTASTSEDGRAQPSGSLSTSRGSCT 419
           P R YRM  M+    AS +ED   + S +++ +R   T
Sbjct: 94  PIRTYRMNSMVNQAKASATEDPNLEISQAVNKNRSDST 131


>At3g28790.1 68416.m03593 expressed protein 
          Length = 608

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 14/29 (48%), Positives = 16/29 (55%)
 Frame = -2

Query: 511 GPMLASCTASTSEDGRAQPSGSLSTSRGS 425
           G    S T STS DG+A   GS S S G+
Sbjct: 377 GSPSGSPTPSTSTDGKASSKGSASASAGA 405


>At2g43800.1 68415.m05445 formin homology 2 domain-containing
           protein / FH2 domain-containing protein contains formin
           homology 2 domain, Pfam:PF02181
          Length = 894

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 10/33 (30%), Positives = 18/33 (54%)
 Frame = -1

Query: 410 VHSEPGADAPTDEQHIERHASLSAPHPHVEAFF 312
           V S+P + +P    H ++H + + P PH +  F
Sbjct: 49  VSSQPPSPSPHTHHHHKKHLTTTTPPPHEKHLF 81


>At1g05630.1 68414.m00584 endonuclease/exonuclease/phosphatase
           family protein similar to inositol 1,4,5-trisphosphate
           5-phosphatase (GI:4688596) [Arabidopsis thaliana]
          Length = 861

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 15/42 (35%), Positives = 19/42 (45%), Gaps = 2/42 (4%)
 Frame = +2

Query: 122 LALSWSNNGED--RFMSRGCFTLKAAARGGVRTWPAQSPSTL 241
           L  SW ++ E   +  + G F    A  GGVR W   SP  L
Sbjct: 509 LISSWVSHNEPVIKLAAGGGFIFSLATHGGVRGWYVTSPGPL 550


>At3g28300.1 68416.m03535 integrin-related protein 14a identical to
           integrin-related At14a protein GI:11994573 [Arabidopsis
           thaliana]
          Length = 385

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 16/39 (41%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
 Frame = +3

Query: 324 NVRMWGAQRRVTL-DVLLICWGIGTWLGVNGLYVQLPLL 437
           NV   GA   V +  ++L+C G+G  +GV GL + LPL+
Sbjct: 220 NVLFIGAFVAVAVGSMVLVCTGVGAGVGVAGL-LSLPLI 257


>At3g28290.1 68416.m03533 integrin-related protein 14a identical to
           At14a protein GI:11994573 [Arabidopsis thaliana] [Gene
           230 (1), 33-40 (1999)], At14a protein [Arabidopsis
           thaliana] GI:4589123
          Length = 385

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 16/39 (41%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
 Frame = +3

Query: 324 NVRMWGAQRRVTL-DVLLICWGIGTWLGVNGLYVQLPLL 437
           NV   GA   V +  ++L+C G+G  +GV GL + LPL+
Sbjct: 220 NVLFIGAFVAVAVGSMVLVCTGVGAGVGVAGL-LSLPLI 257


>At3g23550.1 68416.m02963 MATE efflux family protein similar to
           ripening regulated protein DDTFR18 [Lycopersicon
           esculentum] GI:12231296; contains Pfam profile: PF01554
           uncharacterized membrane protein family
          Length = 469

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = -3

Query: 276 LTCGWEVAQPTTSVDGLWAGHVRTPPRAAAFSVK 175
           LTCG   A  T   + L AG+V+   +A + SVK
Sbjct: 307 LTCGLSAATSTRVSNELGAGNVKGAKKATSVSVK 340


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,745,297
Number of Sequences: 28952
Number of extensions: 269073
Number of successful extensions: 705
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 688
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 705
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1072696904
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)