Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0624
         (662 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC26A3.07c |rpl1101|rpl11-1, rpl11|60S ribosomal protein L11|S...    32   0.085
SPBC17G9.10 |rpl1102|rpl11-2|60S ribosomal protein L11|Schizosac...    32   0.085
SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha...    30   0.34 
SPBC14F5.06 |||iron-sulfur protein|Schizosaccharomyces pombe|chr...    29   0.79 
SPAC1F7.06 |||ThiJ domain protein|Schizosaccharomyces pombe|chr ...    27   2.4  
SPAC222.13c |||6-phosphofructo-2-kinase |Schizosaccharomyces pom...    27   3.2  
SPAC959.05c |||protein disulfide isomerase |Schizosaccharomyces ...    26   4.2  
SPAP27G11.12 |||human down-regulated in multiple cancers-1 homol...    25   7.4  
SPBC31F10.16 |||ChAPs family protein|Schizosaccharomyces pombe|c...    25   7.4  
SPBP8B7.15c |||ubiquitin-protein ligase E3 RBBP6 family |Schizos...    25   7.4  
SPCP1E11.05c |||sterol O-acyltransferase |Schizosaccharomyces po...    25   7.4  
SPAC139.05 |||succinate-semialdehyde dehydrogenase |Schizosaccha...    25   9.7  
SPCC1020.12c ||SPCC14G10.06|xap-5-like protein|Schizosaccharomyc...    25   9.7  

>SPAC26A3.07c |rpl1101|rpl11-1, rpl11|60S ribosomal protein
           L11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 174

 Score = 31.9 bits (69), Expect = 0.085
 Identities = 17/64 (26%), Positives = 30/64 (46%), Gaps = 2/64 (3%)
 Frame = -2

Query: 502 VKHVYIVKRKFAGAPVASLLVDRHVVIAVDHSVAVAVLAKSFHVVLD--GLRGAVRVYSA 329
           VK   + KR F+        +  H+ + + +  ++ +    F+VV+D  G+R A R    
Sbjct: 86  VKEYELKKRNFSATGNFGFGIQEHIDLGIKYDPSIGIYGMDFYVVMDRPGMRVARRKAQR 145

Query: 328 ARVG 317
            RVG
Sbjct: 146 GRVG 149


>SPBC17G9.10 |rpl1102|rpl11-2|60S ribosomal protein
           L11|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 174

 Score = 31.9 bits (69), Expect = 0.085
 Identities = 17/64 (26%), Positives = 30/64 (46%), Gaps = 2/64 (3%)
 Frame = -2

Query: 502 VKHVYIVKRKFAGAPVASLLVDRHVVIAVDHSVAVAVLAKSFHVVLD--GLRGAVRVYSA 329
           VK   + KR F+        +  H+ + + +  ++ +    F+VV+D  G+R A R    
Sbjct: 86  VKEYELKKRNFSATGNFGFGIQEHIDLGIKYDPSIGIYGMDFYVVMDRPGMRVARRKAQR 145

Query: 328 ARVG 317
            RVG
Sbjct: 146 GRVG 149


>SPBC23E6.09 |ssn6||transcriptional corepressor
           Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1102

 Score = 29.9 bits (64), Expect = 0.34
 Identities = 15/44 (34%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
 Frame = -3

Query: 225 PSHC-RPCLHPEIAWQMQPRHTSVTGGSSETSAKQTPATNSNAQ 97
           PSH  R  LHP ++ Q QP   S + G ++ + +Q P+ +  +Q
Sbjct: 54  PSHLPRSTLHPLLSQQQQPAQQSPSLGPAQQNIQQPPSVSIASQ 97


>SPBC14F5.06 |||iron-sulfur protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 593

 Score = 28.7 bits (61), Expect = 0.79
 Identities = 21/61 (34%), Positives = 30/61 (49%), Gaps = 3/61 (4%)
 Frame = -2

Query: 487 IVKRKFAGAPVASLLVDRHVVIAVDHSVAVAVLAKSFHVVLDG---LRGAVRVYSAARVG 317
           I +R  AG  + SLL   + VI V+H ++V      F  VL G   + G V +  + R G
Sbjct: 252 IKQRLKAGRVIRSLLATTNYVIVVEHDLSVLDYLSDFVCVLYGVPSMYGVVTLPYSVREG 311

Query: 316 I 314
           I
Sbjct: 312 I 312


>SPAC1F7.06 |||ThiJ domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 251

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = +2

Query: 413 VNCYDYMAIHKKGGYGCTGELP 478
           +N  DY+ ++  GGYGC+ + P
Sbjct: 105 LNPSDYVIVYIPGGYGCSFDFP 126


>SPAC222.13c |||6-phosphofructo-2-kinase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 592

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 10/18 (55%), Positives = 14/18 (77%)
 Frame = -1

Query: 164 LPSQGGVPKHRRNRLRQP 111
           L  +G + KHR+NRLR+P
Sbjct: 90  LKDEGKLGKHRKNRLRRP 107


>SPAC959.05c |||protein disulfide isomerase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 632

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 10/23 (43%), Positives = 11/23 (47%)
 Frame = -3

Query: 231 VSPSHCRPCLHPEIAWQMQPRHT 163
           VS  HC  C H E  W    R+T
Sbjct: 204 VSLKHCEDCFHWEAVWSSITRNT 226


>SPAP27G11.12 |||human down-regulated in multiple cancers-1 homolog
           1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 797

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 10/36 (27%), Positives = 16/36 (44%)
 Frame = +3

Query: 15  CASAYTSFFNNIFCLCISDAMASAVIRFVRCCWLPE 122
           C +   S  N    LC+  ++ +  +RF    W PE
Sbjct: 214 CCAYVASIANRRLVLCLLSSLINTAMRFNTMFWKPE 249


>SPBC31F10.16 |||ChAPs family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 679

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 11/44 (25%), Positives = 19/44 (43%)
 Frame = -2

Query: 193 DSLANAAETHFRHRGEFRNIGETDSGNQQQRTNLITAEAIASEI 62
           D L       F    E+R++ +   GN     N +  E++A E+
Sbjct: 447 DELLRVRSAVFVMEEEYRSLNDITEGNASPDQNEVAEESVAEEV 490


>SPBP8B7.15c |||ubiquitin-protein ligase E3 RBBP6 family
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 482

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 18/60 (30%), Positives = 24/60 (40%), Gaps = 2/60 (3%)
 Frame = -3

Query: 249 MRKRPHVS--PSHCRPCLHPEIAWQMQPRHTSVTGGSSETSAKQTPATNSNAQT*SQPKP 76
           M   PHV   P+   P + P +  QM P   +   G    + +  P TNS     S P P
Sbjct: 412 MPSMPHVQGFPAPFPPFMMPGLP-QMPPMMMNAIAGQVYHNNRNPPRTNSRPSNASVPPP 470


>SPCP1E11.05c |||sterol O-acyltransferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 472

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = -2

Query: 430 VVIAVDHSVAVAVLAKSFHVVLDGLRGAVRVYSAARVG 317
           +VI  DH + V VLAK+   +++    A   Y A R+G
Sbjct: 279 LVIISDHFM-VPVLAKAIRTIIEAPEDASATYFAIRLG 315


>SPAC139.05 |||succinate-semialdehyde dehydrogenase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 493

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 14/44 (31%), Positives = 19/44 (43%), Gaps = 1/44 (2%)
 Frame = +1

Query: 64  FPTQWLRL*SGLCVAVGCRSLFRRCFGTP-PCDGSVSRLHLPGY 192
           FP   +    G  +A GC ++F   F TP  C G V      G+
Sbjct: 166 FPAAMIARKGGAALAAGCTAIFLPAFRTPYVCLGLVRLAQEAGF 209


>SPCC1020.12c ||SPCC14G10.06|xap-5-like protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 288

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 8/23 (34%), Positives = 15/23 (65%)
 Frame = -3

Query: 258 PHVMRKRPHVSPSHCRPCLHPEI 190
           PH+++K  ++   H  PC+H E+
Sbjct: 241 PHLVQKSYYLQNRHVFPCVHWEV 263


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,868,839
Number of Sequences: 5004
Number of extensions: 61246
Number of successful extensions: 157
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 157
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 301829700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)