Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0624
(662 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0440 - 17605405-17605476,17605558-17605629,17606014-176062... 31 1.1
01_01_0235 - 1964981-1964997,1965545-1966325 30 1.4
09_02_0466 + 9599389-9599662,9600324-9600643,9600950-9601186,960... 30 1.9
03_01_0256 - 1992298-1993878 30 1.9
11_02_0093 - 8238947-8239615 29 3.3
09_02_0317 + 7186148-7186243,7186406-7186572,7186766-7186878,718... 29 4.4
05_04_0029 - 17321378-17321905,17323348-17323525,17323531-173239... 29 4.4
04_01_0066 - 652339-652382,652641-653593,654492-654568,655812-65... 29 4.4
11_06_0131 - 20416257-20417635,20419525-20419905,20420703-20423415 28 5.8
07_01_0811 - 6377328-6377628,6377708-6377878,6377961-6378145,637... 28 7.6
04_03_0925 - 20856628-20856690,20856786-20856845,20856924-208570... 28 7.6
>09_04_0440 -
17605405-17605476,17605558-17605629,17606014-17606277,
17607106-17607510
Length = 270
Score = 30.7 bits (66), Expect = 1.1
Identities = 21/61 (34%), Positives = 31/61 (50%)
Frame = -1
Query: 224 PRTADLACIQR*PGKCSRDTLPSQGGVPKHRRNRLRQPTATHKPDHSRSHCVGNTQTKNI 45
P A A + R P + +R TLP+QG H R R+ T H P R C+G+ + K +
Sbjct: 3 PAAAAAAALVRLPLRPARATLPNQG---THARTHARRDT-VHSPRIFR--CMGDGRAKTL 56
Query: 44 I 42
+
Sbjct: 57 V 57
>01_01_0235 - 1964981-1964997,1965545-1966325
Length = 265
Score = 30.3 bits (65), Expect = 1.4
Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 2/60 (3%)
Frame = +2
Query: 158 TEVCLGCICQAISGCKQG-LQCEGETCGLFRITWGYWADAGKPTINGLSPDAP-DAYSSC 331
T +CL + + C + +CE TCG + + +W G P N + +P A +SC
Sbjct: 4 TLLCLPLLASLLLLCHRARAECEPATCGNLTVRYPFW--LGGPNFNQSNQSSPSSALASC 61
>09_02_0466 +
9599389-9599662,9600324-9600643,9600950-9601186,
9601278-9601445,9601778-9601966
Length = 395
Score = 29.9 bits (64), Expect = 1.9
Identities = 14/45 (31%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Frame = -2
Query: 538 LRSVLREDIDALVKHVYIVKR-KFAGAPVASLLVDRHVVIAVDHS 407
L +L+ I+ + KHV ++ R K G P + LL H +++ H+
Sbjct: 244 LELLLQSGIELMGKHVTVIGRSKVVGLPTSLLLQRHHATVSIIHA 288
>03_01_0256 - 1992298-1993878
Length = 526
Score = 29.9 bits (64), Expect = 1.9
Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 2/52 (3%)
Frame = +1
Query: 49 FFVCVFPTQWLRL*SGLCVAVGCRSLFRRCFGTPP--CDGSVSRLHLPGYLW 198
F VF Q + +G VA+G ++FR F PP D + S Y+W
Sbjct: 164 FIAAVFAMQGFGILAGGAVAIGITAIFRSRFPAPPFAADPAASTPPQADYVW 215
>11_02_0093 - 8238947-8239615
Length = 222
Score = 29.1 bits (62), Expect = 3.3
Identities = 11/26 (42%), Positives = 14/26 (53%)
Frame = +2
Query: 581 YHCFMVIRHSFHQHQYYFYDESVTIH 658
Y CF IRH Q++ D+ TIH
Sbjct: 132 YRCFTFIRHDVLARQWFCTDDEFTIH 157
>09_02_0317 +
7186148-7186243,7186406-7186572,7186766-7186878,
7187059-7187133,7187215-7187328,7187545-7187612,
7187690-7187773,7187966-7188019,7188104-7188184,
7188279-7188372,7188501-7188574,7188656-7188766,
7188976-7189032,7189119-7189223,7189584-7189687,
7190021-7190186,7190279-7190416
Length = 566
Score = 28.7 bits (61), Expect = 4.4
Identities = 13/37 (35%), Positives = 18/37 (48%)
Frame = +2
Query: 281 PTINGLSPDAPDAYSSCTVDPYCAAQTVQNYMKRFGQ 391
P + G + S+ T+DP CA VQ + FGQ
Sbjct: 29 PCLEGKAIRVEFGDSTTTIDPTCANMVVQEFPNTFGQ 65
>05_04_0029 -
17321378-17321905,17323348-17323525,17323531-17323910,
17323936-17324052
Length = 400
Score = 28.7 bits (61), Expect = 4.4
Identities = 14/43 (32%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
Frame = +2
Query: 410 VVNCYDYMAIH-KKGGYGCTGELPFNYVNVFNQCINVFAQYRS 535
+V C Y+ I+ +GG GC + V C+NV Y S
Sbjct: 350 LVPCLSYLKIYMSRGGVGCFERTMIVGILVIGVCVNVVGTYTS 392
>04_01_0066 -
652339-652382,652641-653593,654492-654568,655812-655917,
656200-656261,656676-656784,657015-657385
Length = 573
Score = 28.7 bits (61), Expect = 4.4
Identities = 21/55 (38%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Frame = +2
Query: 281 PTINGLSPDAPDA-YSSCTVDPYCAAQTVQNYMKRFGQDCNGDGVVNCYDYMAIH 442
PTI LSPD PD ++S + A++ + + MKRF Q V +D +AIH
Sbjct: 349 PTIRELSPDEPDEFFTSILHNMRNASRGIIDNMKRFIQH-----KVQTWDNIAIH 398
>11_06_0131 - 20416257-20417635,20419525-20419905,20420703-20423415
Length = 1490
Score = 28.3 bits (60), Expect = 5.8
Identities = 16/41 (39%), Positives = 21/41 (51%)
Frame = -2
Query: 556 LIRQSYLRSVLREDIDALVKHVYIVKRKFAGAPVASLLVDR 434
LI Y R+++ D D ++ V I R GAPV L DR
Sbjct: 1327 LIPWEYFRNIVAADGDDTMRFVSIDNRCCCGAPVIRSLCDR 1367
>07_01_0811 -
6377328-6377628,6377708-6377878,6377961-6378145,
6378255-6378797,6378879-6379304,6379383-6380116,
6380205-6380334
Length = 829
Score = 27.9 bits (59), Expect = 7.6
Identities = 11/31 (35%), Positives = 20/31 (64%)
Frame = -3
Query: 198 PEIAWQMQPRHTSVTGGSSETSAKQTPATNS 106
PEI Q +HTS++GG+S + + + P + +
Sbjct: 40 PEIHELQQEQHTSMSGGTSASRSSRNPRSQN 70
>04_03_0925 -
20856628-20856690,20856786-20856845,20856924-20857001,
20857127-20857192,20857542-20858675,20858991-20860283
Length = 897
Score = 27.9 bits (59), Expect = 7.6
Identities = 21/76 (27%), Positives = 32/76 (42%), Gaps = 1/76 (1%)
Frame = +3
Query: 261 TGLMPENPPSMVSHLTLRMPTLAAL*TRTAPRRPSKTT*KDLARTATATEWSTA-MTTWR 437
TG++P PP + + R +RTA R + TT ++R A + A R
Sbjct: 101 TGVLPRKPPGTTAPVAARNIPATTAASRTATRATTTTTATSVSRRPAAAAAAVASRIPLR 160
Query: 438 STRREATGAPANFLLT 485
+T T A + LT
Sbjct: 161 ATDATTTHAASRNPLT 176
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,963,575
Number of Sequences: 37544
Number of extensions: 465778
Number of successful extensions: 1347
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1304
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1345
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1667659452
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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