Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0624
         (662 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_55053| Best HMM Match : MORN_2 (HMM E-Value=2.6e-06)                31   0.84 
SB_50089| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.5  
SB_21926| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.9  
SB_18583| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.4  
SB_8084| Best HMM Match : EGF_CA (HMM E-Value=2.8026e-45)              29   3.4  
SB_8083| Best HMM Match : Lectin_C (HMM E-Value=3.8e-22)               29   3.4  
SB_11718| Best HMM Match : NHL (HMM E-Value=1.5e-12)                   28   5.9  
SB_58033| Best HMM Match : HSA (HMM E-Value=3.2)                       28   7.8  
SB_33855| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.8  
SB_18457| Best HMM Match : GPW_gp25 (HMM E-Value=2.7)                  28   7.8  

>SB_55053| Best HMM Match : MORN_2 (HMM E-Value=2.6e-06)
          Length = 417

 Score = 31.1 bits (67), Expect = 0.84
 Identities = 27/100 (27%), Positives = 40/100 (40%), Gaps = 15/100 (15%)
 Frame = +2

Query: 218 CEGETCGLFRITWGYWADAGKPTI-NG----LSPDAPDAYSSCTVDPYCAAQTVQNY--- 373
           C G+T  L+  TW  + + G   + NG    L   A   Y    VD  C  QT+  Y   
Sbjct: 227 CNGQTISLYGTTWSVYQEGGVDKVCNGQTISLYGTAWSVYQEGGVDKVCNGQTISLYGTA 286

Query: 374 ---MKRFGQD--CNGDGVVNCYDYMAIHKKGGYG--CTGE 472
               +  G D  CNG  +        ++++GG    C G+
Sbjct: 287 WTVYQEGGVDKVCNGQTISLYGTAWTVYQEGGVDKVCNGQ 326



 Score = 29.1 bits (62), Expect = 3.4
 Identities = 26/100 (26%), Positives = 40/100 (40%), Gaps = 15/100 (15%)
 Frame = +2

Query: 218 CEGETCGLFRITWGYWADAGKPTI-NG----LSPDAPDAYSSCTVDPYCAAQTVQNY--- 373
           C G+T  L+  TW  + + G   + NG    L   A   Y    VD  C   T+  Y   
Sbjct: 11  CNGQTISLYGTTWSVYQEGGVDKVCNGQTISLYGTAWSVYQEGGVDKVCNGWTISLYGTA 70

Query: 374 ---MKRFGQD--CNGDGVVNCYDYMAIHKKGGYG--CTGE 472
               +  G D  CNG  +       +++++GG    C G+
Sbjct: 71  WTVFQEGGVDKVCNGQTISLYGTAWSVYQEGGVDMVCNGQ 110



 Score = 28.3 bits (60), Expect = 5.9
 Identities = 18/57 (31%), Positives = 23/57 (40%), Gaps = 5/57 (8%)
 Frame = +2

Query: 218 CEGETCGLFRITWGYWADAGKPTI-NG----LSPDAPDAYSSCTVDPYCAAQTVQNY 373
           C G T  L+  TW  + + G   + NG    L   A   Y    VD  C  QT+  Y
Sbjct: 347 CNGWTISLYGTTWSVYQEGGVDKVCNGQTISLYGTAWSVYQDGGVDKVCNGQTISLY 403


>SB_50089| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 91

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 14/47 (29%), Positives = 23/47 (48%)
 Frame = +2

Query: 251 TWGYWADAGKPTINGLSPDAPDAYSSCTVDPYCAAQTVQNYMKRFGQ 391
           TW +W+  G P ++  S  A  + S  T  P+ A +  QN +   G+
Sbjct: 38  TWFFWSSRGYPVVSLASQPASQSVSRATPRPHTAPKWRQNTITAQGK 84


>SB_21926| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 113

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 22/81 (27%), Positives = 37/81 (45%)
 Frame = +3

Query: 297 SHLTLRMPTLAAL*TRTAPRRPSKTT*KDLARTATATEWSTAMTTWRSTRREATGAPANF 476
           +HL +  P  + +    A  R +  + KD+++TAT    S AMTT+   +      P   
Sbjct: 2   THLIVITPAESLIDAIMATARHADRSVKDISQTATTLVRSVAMTTYLLKQNHQFATPNRS 61

Query: 477 LLTM*TCLTSASMSSRSTDLK 539
           L+   +C  S+ + SR    K
Sbjct: 62  LM---SCTESSPILSRQRRTK 79


>SB_18583| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 965

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 13/43 (30%), Positives = 24/43 (55%)
 Frame = +2

Query: 371  YMKRFGQDCNGDGVVNCYDYMAIHKKGGYGCTGELPFNYVNVF 499
            ++K  G + +GDG ++  + +AI    GY    +L  N ++VF
Sbjct: 923  FVKEIGSEGSGDGQLSFPESVAIMPNSGYIVVSDLSNNRIHVF 965


>SB_8084| Best HMM Match : EGF_CA (HMM E-Value=2.8026e-45)
          Length = 3094

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 25/92 (27%), Positives = 38/92 (41%)
 Frame = +3

Query: 261 TGLMPENPPSMVSHLTLRMPTLAAL*TRTAPRRPSKTT*KDLARTATATEWSTAMTTWRS 440
           T ++PE   +  +  T+   T AA  T  AP   +         T    E + A+ T  +
Sbjct: 35  TTMVPETTSAPAT--TMAPETTAAPVTTMAPETTAAPATTTALETTMVPETTAALET--T 90

Query: 441 TRREATGAPANFLLTM*TCLTSASMSSRSTDL 536
              E T APA  L T  T     +++  +TDL
Sbjct: 91  VASETTDAPATTLATETTAAPETTVAPETTDL 122



 Score = 29.1 bits (62), Expect = 3.4
 Identities = 25/92 (27%), Positives = 38/92 (41%)
 Frame = +3

Query: 261  TGLMPENPPSMVSHLTLRMPTLAAL*TRTAPRRPSKTT*KDLARTATATEWSTAMTTWRS 440
            T ++PE   +  +  T+   T AA  T  AP   +         T    E + A+ T  +
Sbjct: 1110 TTMVPETTSAPAT--TMAPETTAAPVTTMAPETTAAPATTTALETTMVPETTAALET--T 1165

Query: 441  TRREATGAPANFLLTM*TCLTSASMSSRSTDL 536
               E T APA  L T  T     +++  +TDL
Sbjct: 1166 VASETTDAPATTLATETTAAPETTVAPETTDL 1197


>SB_8083| Best HMM Match : Lectin_C (HMM E-Value=3.8e-22)
          Length = 3445

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 25/92 (27%), Positives = 38/92 (41%)
 Frame = +3

Query: 261  TGLMPENPPSMVSHLTLRMPTLAAL*TRTAPRRPSKTT*KDLARTATATEWSTAMTTWRS 440
            T ++PE   +  +  T+   T AA  T  AP   +         T    E + A+ T  +
Sbjct: 2362 TTMVPETTSAPAT--TMAPETTAAPVTTMAPETTAAPATTTALETTMVPETTAALET--T 2417

Query: 441  TRREATGAPANFLLTM*TCLTSASMSSRSTDL 536
               E T APA  L T  T     +++  +TDL
Sbjct: 2418 VASETTDAPATTLATETTAAPETTVAPETTDL 2449


>SB_11718| Best HMM Match : NHL (HMM E-Value=1.5e-12)
          Length = 85

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +2

Query: 368 NYMKRFGQDCNGDGVVNCYDYMAIHKKG 451
           N++  FG   NG G  NC  ++AI+ KG
Sbjct: 50  NHVTSFGSLGNGRGQFNCPSHVAINSKG 77


>SB_58033| Best HMM Match : HSA (HMM E-Value=3.2)
          Length = 249

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = +2

Query: 407 GVVNCYDYMAIHKKGGYGCTGELPFNYVNVFNQCINVFAQYRS 535
           G  NC   +A+ K GG   +G L +  ++ F +   V   YRS
Sbjct: 23  GDFNCVSNLALDKWGGSALSGTLGYPALHTFLERFRVLDLYRS 65


>SB_33855| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 879

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 18/50 (36%), Positives = 25/50 (50%)
 Frame = -2

Query: 406 VAVAVLAKSFHVVLDGLRGAVRVYSAARVGIRSVR*ETIDGGFSGISPVA 257
           V +AVL     +V+ GL G + V   A +  R  R E  + G+SG   VA
Sbjct: 633 VGLAVLIAILFLVIFGLIGYIVVLKRAGLTTRKKRPEADNPGYSGFQNVA 682


>SB_18457| Best HMM Match : GPW_gp25 (HMM E-Value=2.7)
          Length = 577

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = +1

Query: 115 CRSLFRRCFGTPPCDGSVSRLHL 183
           C S  R    TPPCD S+  LH+
Sbjct: 23  CDSSMRLLHATPPCDSSMRLLHV 45



 Score = 27.9 bits (59), Expect = 7.8
 Identities = 13/28 (46%), Positives = 14/28 (50%)
 Frame = +1

Query: 97  LCVAVGCRSLFRRCFGTPPCDGSVSRLH 180
           L V   C S  R    TPPCD S+  LH
Sbjct: 43  LHVTPPCDSSMRLLHATPPCDSSMRLLH 70


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,801,822
Number of Sequences: 59808
Number of extensions: 539631
Number of successful extensions: 2070
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1932
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2067
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1705624125
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)