Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0624
         (662 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g58227.1 68414.m06616 hypothetical protein                          30   1.2  
At3g48700.1 68416.m05318 expressed protein similar to PrMC3 [Pin...    30   1.6  
At2g39450.1 68415.m04842 cation efflux family protein contains c...    29   2.8  
At5g05140.1 68418.m00545 transcription elongation factor-related...    27   8.4  

>At1g58227.1 68414.m06616 hypothetical protein
          Length = 1323

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 14/41 (34%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
 Frame = +2

Query: 401 GDGVVNCYDYMAIHKKGGYGCTGELPFNYV--NVFNQCINV 517
           GDG +  + +M+ + KG +   G+   +YV  N+  QC+NV
Sbjct: 486 GDGKMGIFSFMSKNGKGCFAALGKDGLSYVSLNLKRQCVNV 526


>At3g48700.1 68416.m05318 expressed protein similar to PrMC3 [Pinus
           radiata] GI:5487873
          Length = 329

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 14/33 (42%), Positives = 15/33 (45%)
 Frame = +2

Query: 197 GCKQGLQCEGETCGLFRITWGYWADAGKPTING 295
           GC + L    E   L R  WGYW   GK   NG
Sbjct: 257 GCGKVLVMVAEKDALVRQGWGYWEKLGKSRWNG 289


>At2g39450.1 68415.m04842 cation efflux family protein contains
           cation efflux family protein domain, Pfam:PF01545
          Length = 394

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 9/11 (81%), Positives = 11/11 (100%)
 Frame = -1

Query: 104 THKPDHSRSHC 72
           THKP+H+RSHC
Sbjct: 384 THKPEHARSHC 394


>At5g05140.1 68418.m00545 transcription elongation factor-related
           low similarity to transcription elongation factor
           TFIIS.h [Mus musculus] GI:3288547, elongin A [Mus
           musculus] GI:6009624
          Length = 436

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = +3

Query: 354 RRPSKTT*KDLARTATATEWSTAMTTWRSTRREATGA 464
           R+ S    + LA+T  A EW   +  W +T +E TGA
Sbjct: 189 RKHSSDKIRQLAKTLIA-EWKELVDQWVNTTKEITGA 224


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,504,993
Number of Sequences: 28952
Number of extensions: 346691
Number of successful extensions: 941
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 910
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 940
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1393347168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)