Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0622
         (708 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_9857| Best HMM Match : No HMM Matches (HMM E-Value=.)               80   2e-15
SB_35108| Best HMM Match : AT_hook (HMM E-Value=0.15)                  31   0.92 
SB_26086| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.9  
SB_25483| Best HMM Match : zf-B_box (HMM E-Value=0.21)                 29   4.9  
SB_20883| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.5  

>SB_9857| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1125

 Score = 79.8 bits (188), Expect = 2e-15
 Identities = 60/165 (36%), Positives = 88/165 (53%), Gaps = 4/165 (2%)
 Frame = +1

Query: 226 RKKKMACATLKRNLDWE---SKAQLPT-KRRRCSPFAASPSTSPGLKTSESKPSSFGESV 393
           R  KMACATLKR+ +++   S    P+ KRRRC P A S S S    +S +  S F E  
Sbjct: 151 RFSKMACATLKRSYEFDPLLSPQHQPSPKRRRCIPMATSSSPS----SSSNTDSPFLEIT 206

Query: 394 SAPVKITPERMAQEIYDEIKRLHRRGQLRLANXXXXXXXXXXXXXXXXXPPHQSAHGPQR 573
               + + E+++  ++ E KRL RR  L+  +                  P  S   P R
Sbjct: 207 P---RYSQEQLSTNLHMEWKRLQRRKHLKAPSSNSVESMNTYTCS-----PSSS---PTR 255

Query: 574 ARTRALFTFKQVRMICERMLHDQEVALRAEYESVLSTKLAEQYEA 708
            + + LFT KQV ++CERML +++  LR EY+ VL+ KL+EQY++
Sbjct: 256 -KEQPLFTLKQVSLLCERMLKERDTQLREEYDKVLAQKLSEQYDS 299


>SB_35108| Best HMM Match : AT_hook (HMM E-Value=0.15)
          Length = 1600

 Score = 31.1 bits (67), Expect = 0.92
 Identities = 21/88 (23%), Positives = 37/88 (42%)
 Frame = +1

Query: 184  QIR*HIRKPEDFVGRKKKMACATLKRNLDWESKAQLPTKRRRCSPFAASPSTSPGLKTSE 363
            Q R    KP+D   RK K++C T K       K +   +  +    A+S +     ++S+
Sbjct: 979  QARPRPSKPQDQASRKTKVSCMTKKDQYQASRKTKQVARPSKPQDQASSKTQD---QSSD 1035

Query: 364  SKPSSFGESVSAPVKITPERMAQEIYDE 447
             +   +   +  P+KI P  + Q    E
Sbjct: 1036 GREGGYSRYLMLPLKIIPAVIIQRALPE 1063


>SB_26086| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1511

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 22/76 (28%), Positives = 36/76 (47%), Gaps = 4/76 (5%)
 Frame = -2

Query: 395 LTDSPNEDGFDSDVFNP----GLVLGLAANGEHLLLFVGNCALDSQSRFLFNVAHAIFFL 228
           + +S + DG+DSD F+        LG   N +  L  V     D++S+ L+N+AH I   
Sbjct: 498 VANSDDSDGWDSDEFDDEDDDNATLGEDRNKKQELDLVFP---DARSKKLYNIAHEILTT 554

Query: 227 RPTKSSGLRICQRICF 180
                  LR+  ++ F
Sbjct: 555 ERAYVKRLRLLDKVFF 570


>SB_25483| Best HMM Match : zf-B_box (HMM E-Value=0.21)
          Length = 258

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 18/66 (27%), Positives = 30/66 (45%)
 Frame = +1

Query: 223 GRKKKMACATLKRNLDWESKAQLPTKRRRCSPFAASPSTSPGLKTSESKPSSFGESVSAP 402
           G++KK     LK   D   + ++ +KR+R  P     ST P      +K +  G+  S  
Sbjct: 7   GKRKKSVEELLKEGRDLLDRQEVKSKRKR-KPVRFLFSTDPATGLRNNKGTYKGQKKSKE 65

Query: 403 VKITPE 420
            ++ PE
Sbjct: 66  KRLNPE 71


>SB_20883| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 672

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 13/35 (37%), Positives = 21/35 (60%)
 Frame = +1

Query: 352 KTSESKPSSFGESVSAPVKITPERMAQEIYDEIKR 456
           +T ESK S    S+S PVK+  E+    +Y+ +K+
Sbjct: 335 ETKESKISRSPISISVPVKVGDEKTKGYVYNVLKK 369


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,756,962
Number of Sequences: 59808
Number of extensions: 475871
Number of successful extensions: 1380
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1170
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1374
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1865706635
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)