Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0622
         (708 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g18760.1 68418.m02228 zinc finger (C3HC4-type RING finger) fa...    32   0.32 
At2g36720.1 68415.m04505 PHD finger transcription factor, putative     30   1.7  
At1g76810.1 68414.m08938 eukaryotic translation initiation facto...    29   4.0  
At2g46550.1 68415.m05807 expressed protein                             28   5.3  
At5g43740.2 68418.m05348 disease resistance protein (CC-NBS-LRR ...    28   7.0  
At5g43740.1 68418.m05347 disease resistance protein (CC-NBS-LRR ...    28   7.0  

>At5g18760.1 68418.m02228 zinc finger (C3HC4-type RING finger)
           family protein predicted proteins, Arabidopsis thaliana
           ; contains Pfam profile PF00097: Zinc finger, C3HC4 type
           (RING finger)
          Length = 411

 Score = 32.3 bits (70), Expect = 0.32
 Identities = 25/64 (39%), Positives = 27/64 (42%), Gaps = 11/64 (17%)
 Frame = +1

Query: 259 RNLDWESKAQLPTKRRRC-----------SPFAASPSTSPGLKTSESKPSSFGESVSAPV 405
           RNL  + KA LP   RR             P  ASP TSP  K   S PSS    +S  V
Sbjct: 68  RNLSLKRKASLPNYERRLLLSPSVSETSEKPLVASPITSPYWKRCLSLPSSNSAKLSLVV 127

Query: 406 KITP 417
             TP
Sbjct: 128 STTP 131


>At2g36720.1 68415.m04505 PHD finger transcription factor, putative
          Length = 1007

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 16/67 (23%), Positives = 28/67 (41%)
 Frame = +1

Query: 214 DFVGRKKKMACATLKRNLDWESKAQLPTKRRRCSPFAASPSTSPGLKTSESKPSSFGESV 393
           D+  ++K+  C   K    + S        + CS    S ++    +TS S P+     V
Sbjct: 365 DYASKEKRFTCKRCKGPFPFSSLGHRGFLCKSCSEVETSQASLAATRTSTSAPACITSPV 424

Query: 394 SAPVKIT 414
            + +KIT
Sbjct: 425 KSRLKIT 431


>At1g76810.1 68414.m08938 eukaryotic translation initiation factor 2
           family protein / eIF-2 family protein similar to IF2
           protein [Drosophila melanogaster] GI:7108770; contains
           Pfam profile PF03144: Elongation factor Tu domain 2
          Length = 1294

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 15/51 (29%), Positives = 25/51 (49%)
 Frame = +1

Query: 268 DWESKAQLPTKRRRCSPFAASPSTSPGLKTSESKPSSFGESVSAPVKITPE 420
           D E +AQ   K+      + +  + P  +   +KP+  G+ + A VK TPE
Sbjct: 618 DEEEEAQPVVKKELKDAISKAHDSEPEAEKPTAKPAGTGKPLIAAVKATPE 668


>At2g46550.1 68415.m05807 expressed protein
          Length = 397

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 25/89 (28%), Positives = 40/89 (44%), Gaps = 5/89 (5%)
 Frame = +1

Query: 229 KKKMACATLKRNLDWESKAQLPTKRRRCSPFAASPS--TSPGLKT-SESKPSSFGESVSA 399
           K ++A    +R+LD+     LPT ++    +  SP    S GL+  S S  +  G S  +
Sbjct: 188 KDELASLVAQRSLDYVENCDLPTPQKMKRSYYGSPRGFDSDGLRDYSVSGQTIKGTSKGS 247

Query: 400 PVKITPERMAQEIYDEIKRLH--RRGQLR 480
             K  PE  ++    + + L   RR Q R
Sbjct: 248 SCKNRPEASSESDLSKSELLEALRRSQTR 276


>At5g43740.2 68418.m05348 disease resistance protein (CC-NBS-LRR
           class), putative domain signature CC-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 862

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 17/40 (42%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
 Frame = +1

Query: 238 MACATLKRNLDWESKAQLPTKRRRCSPFAASPST-SPGLK 354
           + C   +  +DWESK     +RR  SP    PST SPG K
Sbjct: 711 LMCNISEIRIDWESK-----ERRELSPTEILPSTGSPGFK 745


>At5g43740.1 68418.m05347 disease resistance protein (CC-NBS-LRR
           class), putative domain signature CC-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 862

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 17/40 (42%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
 Frame = +1

Query: 238 MACATLKRNLDWESKAQLPTKRRRCSPFAASPST-SPGLK 354
           + C   +  +DWESK     +RR  SP    PST SPG K
Sbjct: 711 LMCNISEIRIDWESK-----ERRELSPTEILPSTGSPGFK 745


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,767,279
Number of Sequences: 28952
Number of extensions: 323536
Number of successful extensions: 887
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 854
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 886
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1526202912
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)