Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0621
         (666 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1183.11 ||SPCC31H12.01|MS ion channel protein 1|Schizosaccha...    27   2.4  
SPAC23A1.04c |mnl1||alpha mannosidase-like protein|Schizosacchar...    26   5.6  
SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|c...    25   7.4  
SPBC146.01 |med15|SPBP35G2.15|mediator complex subunit Med15 |Sc...    25   9.8  
SPBC31F10.14c |hip3|hir3|HIRA interacting protein Hip3|Schizosac...    25   9.8  

>SPCC1183.11 ||SPCC31H12.01|MS ion channel protein
           1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1011

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 15/51 (29%), Positives = 23/51 (45%)
 Frame = +3

Query: 498 IAVVTLVRSRARTR*SKEKLTDVLVFLTCVCVRCTTVFYMFIIIYFEIRNF 650
           +A V + + R     S   L D +  L  +C+    V  +FI +Y   RNF
Sbjct: 570 LACVEIGKERKSISASLRDLNDSISKLDGICMFIVAVITLFIFLYLIARNF 620


>SPAC23A1.04c |mnl1||alpha mannosidase-like
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 787

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = -2

Query: 161 LMILPQVPLRKPCYDFYFL*MIKFGQLP 78
           L++  ++ L K  + +YF   +KFGQLP
Sbjct: 337 LVLAGELELAKKMHLYYFSIYLKFGQLP 364


>SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 796

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 8/30 (26%), Positives = 20/30 (66%)
 Frame = +3

Query: 198 FIYLYIYTHAYIRSFLIFIVYPISHALARV 287
           F+YLY+    +I  FL+++++  + ++A +
Sbjct: 196 FLYLYVLFTYFISIFLLYVLFSSTKSIADI 225


>SPBC146.01 |med15|SPBP35G2.15|mediator complex subunit Med15
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1063

 Score = 25.0 bits (52), Expect = 9.8
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +2

Query: 536 AVIERKTHRRFSFLNVCVRALHHRV 610
           A I+ KT R F+F+   +  LHH V
Sbjct: 685 AKIKEKTSRYFAFVKAQLLRLHHEV 709


>SPBC31F10.14c |hip3|hir3|HIRA interacting protein
            Hip3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1630

 Score = 25.0 bits (52), Expect = 9.8
 Identities = 9/37 (24%), Positives = 20/37 (54%)
 Frame = -2

Query: 377  IVLCVCCRARAVRSSNRYIMSAVRFNIVATNARESVR 267
            I+ CVCCR   +  S  Y+  + + + V   + ++++
Sbjct: 933  ILQCVCCRFNLIIGSEYYVPQSHQSDSVNLTSNDAIK 969


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,278,707
Number of Sequences: 5004
Number of extensions: 38841
Number of successful extensions: 130
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 130
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 303841898
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)