Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0621
(666 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_57049| Best HMM Match : No HMM Matches (HMM E-Value=.) 42 3e-04
SB_13868| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.006
SB_45893| Best HMM Match : Arc (HMM E-Value=3.3) 33 0.21
SB_39542| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.64
SB_16799| Best HMM Match : Extensin_2 (HMM E-Value=0.063) 30 1.5
SB_11244| Best HMM Match : M (HMM E-Value=2.5e-08) 30 1.5
SB_7447| Best HMM Match : CHGN (HMM E-Value=0) 30 1.9
SB_1381| Best HMM Match : TP2 (HMM E-Value=5.2) 30 1.9
SB_54935| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.9
SB_34469| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.9
SB_2867| Best HMM Match : Aerolysin (HMM E-Value=5.3e-06) 28 7.9
SB_46370| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.9
>SB_57049| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 50
Score = 42.3 bits (95), Expect = 3e-04
Identities = 19/24 (79%), Positives = 20/24 (83%)
Frame = -2
Query: 143 VPLRKPCYDFYFL*MIKFGQLPNN 72
V LRKPCYDFYFL MIKF QL +N
Sbjct: 1 VHLRKPCYDFYFLYMIKFDQLFDN 24
>SB_13868| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 56
Score = 38.3 bits (85), Expect = 0.006
Identities = 16/23 (69%), Positives = 17/23 (73%)
Frame = -2
Query: 140 PLRKPCYDFYFL*MIKFGQLPNN 72
P PCYDFYFL MIKF QL +N
Sbjct: 8 PYENPCYDFYFLKMIKFDQLFDN 30
>SB_45893| Best HMM Match : Arc (HMM E-Value=3.3)
Length = 186
Score = 33.1 bits (72), Expect = 0.21
Identities = 14/18 (77%), Positives = 16/18 (88%)
Frame = +3
Query: 81 KLTKLDHLEEVKVVTRFP 134
K+ + DHLEEVKVVTRFP
Sbjct: 73 KVGQTDHLEEVKVVTRFP 90
>SB_39542| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 106
Score = 31.5 bits (68), Expect = 0.64
Identities = 12/15 (80%), Positives = 13/15 (86%)
Frame = -2
Query: 158 MILPQVPLRKPCYDF 114
+I PQVPLR PCYDF
Sbjct: 17 VIQPQVPLRLPCYDF 31
>SB_16799| Best HMM Match : Extensin_2 (HMM E-Value=0.063)
Length = 597
Score = 30.3 bits (65), Expect = 1.5
Identities = 15/25 (60%), Positives = 15/25 (60%), Gaps = 2/25 (8%)
Frame = -3
Query: 79 PTTP--TAVKPPRVGPKPRAEFLQP 11
P TP TA KP R PKP AEF P
Sbjct: 221 PNTPPKTAPKPARSSPKPAAEFRSP 245
>SB_11244| Best HMM Match : M (HMM E-Value=2.5e-08)
Length = 1381
Score = 30.3 bits (65), Expect = 1.5
Identities = 15/25 (60%), Positives = 15/25 (60%), Gaps = 2/25 (8%)
Frame = -3
Query: 79 PTTP--TAVKPPRVGPKPRAEFLQP 11
P TP TA KP R PKP AEF P
Sbjct: 166 PNTPPKTAPKPARSSPKPAAEFRSP 190
>SB_7447| Best HMM Match : CHGN (HMM E-Value=0)
Length = 918
Score = 29.9 bits (64), Expect = 1.9
Identities = 17/57 (29%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Frame = +1
Query: 247 FLSFIRFLTLSRAFVATILNLTADIIYLLLLRTARARQHTHKT-IRALQNTITDTEI 414
+ +F+RF+ + F + LNL AD+ L++ A H HK+ I+ Q + E+
Sbjct: 485 YSTFVRFM---KTFESVCLNLRADVKLLIVYFPEVAESHQHKSLIKKYQTRYPEAEL 538
>SB_1381| Best HMM Match : TP2 (HMM E-Value=5.2)
Length = 428
Score = 29.9 bits (64), Expect = 1.9
Identities = 12/22 (54%), Positives = 14/22 (63%)
Frame = -3
Query: 67 TAVKPPRVGPKPRAEFLQPGGS 2
T PP+ G + EFLQPGGS
Sbjct: 132 TTDSPPKAGQEMEIEFLQPGGS 153
>SB_54935| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 201
Score = 28.3 bits (60), Expect = 5.9
Identities = 14/39 (35%), Positives = 20/39 (51%)
Frame = +3
Query: 3 DPPGCRNSARGFGPTRGGFTAVGVVGKLTKLDHLEEVKV 119
DPPGCRNS G G + KL++ DH+ + +
Sbjct: 17 DPPGCRNSMIGSGGREH-----AIAWKLSQSDHVSTIYI 50
>SB_34469| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 444
Score = 27.9 bits (59), Expect = 7.9
Identities = 17/38 (44%), Positives = 19/38 (50%)
Frame = -3
Query: 121 TTFTSSK*SSLVNFPTTPTAVKPPRVGPKPRAEFLQPG 8
T + K S +FPT T PPRV PKP L PG
Sbjct: 393 TVSLNGKRSVEEDFPTDGTE-DPPRVFPKPPTVVLTPG 429
>SB_2867| Best HMM Match : Aerolysin (HMM E-Value=5.3e-06)
Length = 472
Score = 27.9 bits (59), Expect = 7.9
Identities = 17/38 (44%), Positives = 19/38 (50%)
Frame = -3
Query: 121 TTFTSSK*SSLVNFPTTPTAVKPPRVGPKPRAEFLQPG 8
T + K S +FPT T PPRV PKP L PG
Sbjct: 421 TVSLNGKRSVEEDFPTDGTE-DPPRVFPKPPTVVLTPG 457
>SB_46370| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 204
Score = 27.9 bits (59), Expect = 7.9
Identities = 11/17 (64%), Positives = 12/17 (70%)
Frame = +3
Query: 3 DPPGCRNSARGFGPTRG 53
DPPGCRNS G G + G
Sbjct: 34 DPPGCRNSIDGNGVSDG 50
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,604,899
Number of Sequences: 59808
Number of extensions: 317118
Number of successful extensions: 2495
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 2325
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2460
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1717720750
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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