Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0621
         (666 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006633-5|AAO21429.1|  506|Caenorhabditis elegans Prion-like-(q...    29   3.9  
AC006633-4|AAK68376.3| 1128|Caenorhabditis elegans Prion-like-(q...    29   3.9  
Z75549-7|CAD60423.1|  306|Caenorhabditis elegans Hypothetical pr...    28   5.2  
AF024494-12|AAB70332.3|  332|Caenorhabditis elegans Serpentine r...    27   9.1  

>AC006633-5|AAO21429.1|  506|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 34,
           isoform b protein.
          Length = 506

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = -3

Query: 79  PTTPTAVKPPRVGPKPR 29
           P TP  V+ PR+GP PR
Sbjct: 291 PVTPEPVETPRIGPSPR 307


>AC006633-4|AAK68376.3| 1128|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 34,
           isoform a protein.
          Length = 1128

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = -3

Query: 79  PTTPTAVKPPRVGPKPR 29
           P TP  V+ PR+GP PR
Sbjct: 291 PVTPEPVETPRIGPSPR 307


>Z75549-7|CAD60423.1|  306|Caenorhabditis elegans Hypothetical
           protein T19C4.8 protein.
          Length = 306

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
 Frame = +3

Query: 543 SKEKLTDVLVFLTCVCVRCTTVFYMF-IIIYFEIRNFEY 656
           SK  + D+   L+C  V CT V  +   I Y +IR F +
Sbjct: 167 SKYNIKDIFTTLSCFMVSCTVVTMISNFISYLKIRTFPF 205


>AF024494-12|AAB70332.3|  332|Caenorhabditis elegans Serpentine
           receptor, class u protein28 protein.
          Length = 332

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = +2

Query: 146 AEGSLTFVVLCVICKYFIYLFIYIYACIHSIVLNFY 253
           AE SLT   + +IC Y     I I A ++SI  ++Y
Sbjct: 252 AEVSLTVTTVSMICSYLSNSMIVIAAQLNSIEYSYY 287


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,965,309
Number of Sequences: 27780
Number of extensions: 229357
Number of successful extensions: 860
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 842
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 858
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1497472076
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)