Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0621
         (666 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    24   1.5  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    24   1.5  
AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex det...    22   4.6  
DQ435332-1|ABD92647.1|  135|Apis mellifera OBP15 protein.              22   6.0  
DQ435331-1|ABD92646.1|  135|Apis mellifera OBP14 protein.              22   6.0  
DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    21   8.0  
DQ325105-1|ABD14119.1|  180|Apis mellifera complementary sex det...    21   8.0  
DQ325104-1|ABD14118.1|  180|Apis mellifera complementary sex det...    21   8.0  
AY569698-1|AAS86651.1|  407|Apis mellifera complementary sex det...    21   8.0  

>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 8/25 (32%), Positives = 16/25 (64%)
 Frame = +3

Query: 561 DVLVFLTCVCVRCTTVFYMFIIIYF 635
           D  VF+TC+ +    +  +FII+++
Sbjct: 216 DTKVFVTCIFIWAYVIPLIFIILFY 240


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 8/25 (32%), Positives = 16/25 (64%)
 Frame = +3

Query: 561 DVLVFLTCVCVRCTTVFYMFIIIYF 635
           D  VF+TC+ +    +  +FII+++
Sbjct: 216 DTKVFVTCIFIWAYVIPLIFIILFY 240


>AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 11/30 (36%), Positives = 15/30 (50%)
 Frame = -1

Query: 294 RDKRAREREKSDKR*KLRTIECMHAYIYIN 205
           RD+R RER K  K     +  C ++  Y N
Sbjct: 290 RDRRERERSKEPKIISSLSNSCNYSNNYYN 319


>DQ435332-1|ABD92647.1|  135|Apis mellifera OBP15 protein.
          Length = 135

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 8/40 (20%), Positives = 17/40 (42%)
 Frame = -2

Query: 371 LCVCCRARAVRSSNRYIMSAVRFNIVATNARESVRNRIND 252
           +C+C  A +++     I       +  T   + + N +ND
Sbjct: 10  ICICVGALSIKDFQNAIRMGQSICMAKTGINKQIINDVND 49


>DQ435331-1|ABD92646.1|  135|Apis mellifera OBP14 protein.
          Length = 135

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = +3

Query: 558 TDVLVFLTCVCVRCTTV 608
           T VL+F  CVCV   T+
Sbjct: 3   TIVLIFGFCVCVGALTI 19


>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = +3

Query: 543 SKEKLTDVLVFLTCVCVRCTTVFY 614
           SK+K  DVL+ +  +    + VFY
Sbjct: 314 SKDKPEDVLIIIYTILTYMSGVFY 337


>DQ325105-1|ABD14119.1|  180|Apis mellifera complementary sex
           determiner protein.
          Length = 180

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 9/13 (69%), Positives = 9/13 (69%)
 Frame = -1

Query: 294 RDKRAREREKSDK 256
           RDKR RER K  K
Sbjct: 68  RDKRERERSKERK 80


>DQ325104-1|ABD14118.1|  180|Apis mellifera complementary sex
           determiner protein.
          Length = 180

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 9/13 (69%), Positives = 9/13 (69%)
 Frame = -1

Query: 294 RDKRAREREKSDK 256
           RDKR RER K  K
Sbjct: 68  RDKRERERSKERK 80


>AY569698-1|AAS86651.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -1

Query: 324 YNVSSQIQYRRDKRAREREKSDK 256
           Y  +S+ ++R D+R RER K  K
Sbjct: 292 YRETSKERFR-DRRERERSKESK 313


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 166,028
Number of Sequences: 438
Number of extensions: 3232
Number of successful extensions: 49
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 48
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 49
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20099475
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)