Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0621
         (666 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g47940.1 68416.m05227 DNAJ heat shock protein, putative simil...    28   4.9  
At1g77400.1 68414.m09013 expressed protein                             28   4.9  
At4g28270.1 68417.m04049 zinc finger (C3HC4-type RING finger) fa...    27   8.5  

>At3g47940.1 68416.m05227 DNAJ heat shock protein, putative similar
           to SP|O89114 DnaJ homolog subfamily B member 5 (Heat
           shock protein Hsp40-3) {Mus musculus}; contains Pfam
           profile PF00226: DnaJ domain
          Length = 350

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 14/41 (34%), Positives = 24/41 (58%)
 Frame = -2

Query: 140 PLRKPCYDFYFL*MIKFGQLPNNADGREATACRSEASCRIP 18
           P ++  YD Y    +K G++PN++   EA++  S +S R P
Sbjct: 61  PQKRQIYDLYGEEGLKSGKIPNSSSS-EASSSSSSSSSRYP 100


>At1g77400.1 68414.m09013 expressed protein
          Length = 232

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = -3

Query: 85  NFPTTPTAVKPPRVGPKPRAEFLQPGGS 2
           +F TTP+ +KPPR  P   + F  PG S
Sbjct: 88  SFSTTPSKLKPPRT-PSSLSGFYSPGPS 114


>At4g28270.1 68417.m04049 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097 zinc
           finger, C3HC4 type (RING finger)
          Length = 193

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +3

Query: 516 VRSRARTR*SKEKLTDVLVFLTCVCVRCTTVF 611
           VRSR R   ++E L+ V +FL C    C  +F
Sbjct: 162 VRSRRRAMQAEESLSRVYLFLLCFMFMCLFLF 193


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,680,637
Number of Sequences: 28952
Number of extensions: 194864
Number of successful extensions: 557
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 515
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 555
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1403159472
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)