Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0620
         (656 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC8D2.14c |sed5||SNARE Sed5 |Schizosaccharomyces pombe|chr 2||...    65   7e-12
SPCC4G3.05c |mus81||Holliday junction resolvase subunit Mus81|Sc...    26   5.5  
SPBC336.04 |cdc6|pol3, pold, mis10|DNA polymerase delta catalyti...    25   7.3  
SPAC29A4.08c |prp19|cwf8|ubiquitin-protein ligase E4 |Schizosacc...    25   7.3  
SPBC1734.06 |rhp18||Rad18 homolog Rhp18|Schizosaccharomyces pomb...    25   9.6  
SPACUNK4.08 |||dipeptidyl aminopeptidase |Schizosaccharomyces po...    25   9.6  
SPBC13A2.02 |||nucleoporin Nup82|Schizosaccharomyces pombe|chr 2...    25   9.6  

>SPBC8D2.14c |sed5||SNARE Sed5 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 65.3 bits (152), Expect = 7e-12
 Identities = 37/79 (46%), Positives = 49/79 (62%), Gaps = 4/79 (5%)
 Frame = +2

Query: 431 LAKRKSLFDDRPTEIQELTYIIKGDLNSLNQQIARLGEMPRG----XXXXXXXXXXXXLA 598
           LAKRK+LFDDRP EIQELT+ IK  L+SLN  IA L ++ +G                ++
Sbjct: 67  LAKRKTLFDDRPVEIQELTFQIKQSLSSLNSDIASLQQVVKGNRNKPAQMNQHSENVVVS 126

Query: 599 LQSRLASMSNQFKQVLEVR 655
           LQ+ LA+ S  FK +LE+R
Sbjct: 127 LQNSLANTSMTFKDILEIR 145


>SPCC4G3.05c |mus81||Holliday junction resolvase subunit
           Mus81|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 608

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 16/59 (27%), Positives = 29/59 (49%)
 Frame = +1

Query: 10  TEDYNAMLPRRRNIGVTERLLETETDSYNKLDKKGVHYGESRPYENSSNSKSTLILKSS 186
           T+  N    +R+ + V   L   E  +Y  L ++ +    S PY  S ++ S+++ KSS
Sbjct: 470 TKQINLFYEKRKTLAVIPDL-SIEAKTYESLREQLLKIDPSTPYHISYHAFSSVLSKSS 527


>SPBC336.04 |cdc6|pol3, pold, mis10|DNA polymerase delta catalytic
           subunit Cdc6 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1086

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = +1

Query: 67  LLETETDSYNKLDKKGV 117
           L  T TD+Y+K+D KG+
Sbjct: 798 LFWTRTDTYDKMDSKGI 814


>SPAC29A4.08c |prp19|cwf8|ubiquitin-protein ligase E4
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 488

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 12/41 (29%), Positives = 19/41 (46%)
 Frame = +1

Query: 79  ETDSYNKLDKKGVHYGESRPYENSSNSKSTLILKSSDQDVF 201
           ET S N+L K G H    +  +   N    ++  + D D+F
Sbjct: 361 ETSSGNELTKFGPHSSPVKTLQFGENGYWLVVTTNDDSDIF 401


>SPBC1734.06 |rhp18||Rad18 homolog Rhp18|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 387

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 12/27 (44%), Positives = 16/27 (59%), Gaps = 2/27 (7%)
 Frame = +1

Query: 130 SRPYENSSNSKSTLIL--KSSDQDVFK 204
           S PY+N  NSKS  +L  K+ D  + K
Sbjct: 189 SSPYKNKDNSKSNSLLSFKTDDDSITK 215


>SPACUNK4.08 |||dipeptidyl aminopeptidase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 793

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 12/42 (28%), Positives = 19/42 (45%)
 Frame = +1

Query: 1   WVKTEDYNAMLPRRRNIGVTERLLETETDSYNKLDKKGVHYG 126
           WV T         R +  +T RLL+TE  S + +  + +  G
Sbjct: 322 WVNTSSVLVQFTNRNSTCITARLLDTELKSIHTVKTECLEEG 363


>SPBC13A2.02 |||nucleoporin Nup82|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 803

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 31/116 (26%), Positives = 51/116 (43%), Gaps = 1/116 (0%)
 Frame = +1

Query: 22  NAMLPRRRNIGVTERLLETETDSYNKLDKKGVHYGESRPYENS-SNSKSTLILKSSDQDV 198
           NAM+P+     +   L + E D+  +  ++ VH+      E + +N  ST  + S     
Sbjct: 263 NAMIPQDVLKQIRLILTKKEDDADAENHRRNVHWITKLLGEAALANDLSTSFVISEGSSE 322

Query: 199 FKFLEEFVFEPVMASRDRTSEFISTVRSLQGRFLNKPTVRDDRKAAVLETYSQFMS 366
                ++V      S  R  +F S + S+QG FL +P V DD    ++E Y    S
Sbjct: 323 LFDSSDYV------SVRRPDDF-SFIPSMQGPFLLQPAVADDE---LIEDYCDIYS 368


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,420,426
Number of Sequences: 5004
Number of extensions: 44991
Number of successful extensions: 116
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 116
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 297805304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)