Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0620
         (656 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0560 + 4117203-4117458,4119359-4119609,4119691-4119860,412...    46   4e-05
02_05_0101 - 25824093-25824112,25824734-25824842,25824927-258264...    31   0.81 
03_01_0135 + 1061874-1061896,1061953-1061959,1062384-1062464,106...    28   7.5  

>01_01_0560 +
           4117203-4117458,4119359-4119609,4119691-4119860,
           4120188-4120385,4120922-4121081
          Length = 344

 Score = 45.6 bits (103), Expect = 4e-05
 Identities = 30/82 (36%), Positives = 43/82 (52%), Gaps = 7/82 (8%)
 Frame = +2

Query: 431 LAKRKSLFDDRPTEIQELTYIIKGDLNSLNQQIARL-----GEMPRGXXXXXXXXXXXXL 595
           LAKR S+FDD   EIQELT +IK D+ +LN  +  L      +   G            +
Sbjct: 86  LAKRTSVFDDPTVEIQELTAVIKKDITALNSAVVDLQVLCNSQNESGNLSKDTTNHSTTV 145

Query: 596 A--LQSRLASMSNQFKQVLEVR 655
              L++RL S + +FK+VL +R
Sbjct: 146 VDNLKNRLMSATKEFKEVLTMR 167


>02_05_0101 -
           25824093-25824112,25824734-25824842,25824927-25826429,
           25826596-25827333,25827712-25827919,25828455-25830409,
           25830868-25830960,25831044-25831100,25831189-25831272,
           25831345-25831437,25831622-25832053,25833593-25833933,
           25834663-25835215
          Length = 2061

 Score = 31.1 bits (67), Expect = 0.81
 Identities = 25/70 (35%), Positives = 35/70 (50%), Gaps = 3/70 (4%)
 Frame = +1

Query: 16  DYNAMLPR---RRNIGVTERLLETETDSYNKLDKKGVHYGESRPYENSSNSKSTLILKSS 186
           D+ A++PR    RN    +  L TETD Y   D    H  E++     S  KST  L+S+
Sbjct: 603 DHGAVIPRLEVSRNSWELDDCL-TETDRYGVFDNVVRHLDEAQIQH--SVFKSTEFLRST 659

Query: 187 DQDVFKFLEE 216
           D D+  F+ E
Sbjct: 660 DMDMLTFVCE 669


>03_01_0135 +
           1061874-1061896,1061953-1061959,1062384-1062464,
           1062562-1062604,1064875-1064983,1065221-1065281,
           1065562-1065669,1065670-1065718,1065922-1066055
          Length = 204

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 16/42 (38%), Positives = 20/42 (47%)
 Frame = -3

Query: 354 GVSFQHSSFSIISYGWFV*ETSLETAYS*NEFTCSIS*SHNW 229
           G   QH + S +S GW+V  T   T Y   +  CS   S NW
Sbjct: 31  GCLIQHENISQLSTGWWVGMTVSTTRYEAGKQNCS---SLNW 69


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,289,400
Number of Sequences: 37544
Number of extensions: 248000
Number of successful extensions: 521
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 516
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 521
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1644004708
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)