Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0620
(656 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U26648-1|AAC71078.1| 301|Homo sapiens syntaxin 5 protein. 80 6e-15
BX537426-1|CAD97668.1| 355|Homo sapiens hypothetical protein pr... 80 6e-15
BT019647-1|AAV38453.1| 301|Homo sapiens syntaxin 5A protein. 80 6e-15
BT019646-1|AAV38452.1| 301|Homo sapiens syntaxin 5A protein. 80 6e-15
BC012137-1|AAH12137.2| 355|Homo sapiens syntaxin 5 protein. 80 6e-15
BC002645-1|AAH02645.1| 267|Homo sapiens STX5 protein protein. 80 6e-15
>U26648-1|AAC71078.1| 301|Homo sapiens syntaxin 5 protein.
Length = 301
Score = 80.2 bits (189), Expect = 6e-15
Identities = 45/80 (56%), Positives = 54/80 (67%), Gaps = 5/80 (6%)
Frame = +2
Query: 431 LAKRKSLFDDRPTEIQELTYIIKGDLNSLNQQIARLGEMPR-----GXXXXXXXXXXXXL 595
LAKRKSLFDD+ EI+ELTYIIK D+NSLN+QIA+L + R +
Sbjct: 64 LAKRKSLFDDKAVEIEELTYIIKQDINSLNKQIAQLQDFVRAKGSQSGRHLQTHSNTIVV 123
Query: 596 ALQSRLASMSNQFKQVLEVR 655
+LQS+LASMSN FK VLEVR
Sbjct: 124 SLQSKLASMSNDFKSVLEVR 143
Score = 48.4 bits (110), Expect = 2e-05
Identities = 30/70 (42%), Positives = 43/70 (61%), Gaps = 4/70 (5%)
Frame = +1
Query: 235 MASRDRTSEFISTVRSLQGRF----LNKPTVRDDRKAAVLETYSQFMSMAKVISKNITST 402
M+ RDRT EF+S +SLQ R NKP +R R+ S+F MAK I K++++T
Sbjct: 1 MSCRDRTQEFLSACKSLQTRQNGIQTNKPALRAVRQR------SEFTLMAKRIGKDLSNT 54
Query: 403 YTKLEKLALV 432
+ KLEKL ++
Sbjct: 55 FAKLEKLTIL 64
>BX537426-1|CAD97668.1| 355|Homo sapiens hypothetical protein
protein.
Length = 355
Score = 80.2 bits (189), Expect = 6e-15
Identities = 45/80 (56%), Positives = 54/80 (67%), Gaps = 5/80 (6%)
Frame = +2
Query: 431 LAKRKSLFDDRPTEIQELTYIIKGDLNSLNQQIARLGEMPR-----GXXXXXXXXXXXXL 595
LAKRKSLFDD+ EI+ELTYIIK D+NSLN+QIA+L + R +
Sbjct: 118 LAKRKSLFDDKAVEIEELTYIIKQDINSLNKQIAQLQDFVRAKGSQSGRHLQTHSNTIVV 177
Query: 596 ALQSRLASMSNQFKQVLEVR 655
+LQS+LASMSN FK VLEVR
Sbjct: 178 SLQSKLASMSNDFKSVLEVR 197
Score = 48.4 bits (110), Expect = 2e-05
Identities = 30/70 (42%), Positives = 43/70 (61%), Gaps = 4/70 (5%)
Frame = +1
Query: 235 MASRDRTSEFISTVRSLQGRF----LNKPTVRDDRKAAVLETYSQFMSMAKVISKNITST 402
M+ RDRT EF+S +SLQ R NKP +R R+ S+F MAK I K++++T
Sbjct: 55 MSCRDRTQEFLSACKSLQTRQNGIQTNKPALRAVRQR------SEFTLMAKRIGKDLSNT 108
Query: 403 YTKLEKLALV 432
+ KLEKL ++
Sbjct: 109 FAKLEKLTIL 118
>BT019647-1|AAV38453.1| 301|Homo sapiens syntaxin 5A protein.
Length = 301
Score = 80.2 bits (189), Expect = 6e-15
Identities = 45/80 (56%), Positives = 54/80 (67%), Gaps = 5/80 (6%)
Frame = +2
Query: 431 LAKRKSLFDDRPTEIQELTYIIKGDLNSLNQQIARLGEMPR-----GXXXXXXXXXXXXL 595
LAKRKSLFDD+ EI+ELTYIIK D+NSLN+QIA+L + R +
Sbjct: 64 LAKRKSLFDDKAVEIEELTYIIKQDINSLNKQIAQLQDFVRAKGSQSGRHLQTHSNTIVV 123
Query: 596 ALQSRLASMSNQFKQVLEVR 655
+LQS+LASMSN FK VLEVR
Sbjct: 124 SLQSKLASMSNDFKSVLEVR 143
Score = 48.4 bits (110), Expect = 2e-05
Identities = 30/70 (42%), Positives = 43/70 (61%), Gaps = 4/70 (5%)
Frame = +1
Query: 235 MASRDRTSEFISTVRSLQGRF----LNKPTVRDDRKAAVLETYSQFMSMAKVISKNITST 402
M+ RDRT EF+S +SLQ R NKP +R R+ S+F MAK I K++++T
Sbjct: 1 MSCRDRTQEFLSACKSLQTRQNGIQTNKPALRAVRQR------SEFTLMAKRIGKDLSNT 54
Query: 403 YTKLEKLALV 432
+ KLEKL ++
Sbjct: 55 FAKLEKLTIL 64
>BT019646-1|AAV38452.1| 301|Homo sapiens syntaxin 5A protein.
Length = 301
Score = 80.2 bits (189), Expect = 6e-15
Identities = 45/80 (56%), Positives = 54/80 (67%), Gaps = 5/80 (6%)
Frame = +2
Query: 431 LAKRKSLFDDRPTEIQELTYIIKGDLNSLNQQIARLGEMPR-----GXXXXXXXXXXXXL 595
LAKRKSLFDD+ EI+ELTYIIK D+NSLN+QIA+L + R +
Sbjct: 64 LAKRKSLFDDKAVEIEELTYIIKQDINSLNKQIAQLQDFVRAKGSQSGRHLQTHSNTIVV 123
Query: 596 ALQSRLASMSNQFKQVLEVR 655
+LQS+LASMSN FK VLEVR
Sbjct: 124 SLQSKLASMSNDFKSVLEVR 143
Score = 48.4 bits (110), Expect = 2e-05
Identities = 30/70 (42%), Positives = 43/70 (61%), Gaps = 4/70 (5%)
Frame = +1
Query: 235 MASRDRTSEFISTVRSLQGRF----LNKPTVRDDRKAAVLETYSQFMSMAKVISKNITST 402
M+ RDRT EF+S +SLQ R NKP +R R+ S+F MAK I K++++T
Sbjct: 1 MSCRDRTQEFLSACKSLQTRQNGIQTNKPALRAVRQR------SEFTLMAKRIGKDLSNT 54
Query: 403 YTKLEKLALV 432
+ KLEKL ++
Sbjct: 55 FAKLEKLTIL 64
>BC012137-1|AAH12137.2| 355|Homo sapiens syntaxin 5 protein.
Length = 355
Score = 80.2 bits (189), Expect = 6e-15
Identities = 45/80 (56%), Positives = 54/80 (67%), Gaps = 5/80 (6%)
Frame = +2
Query: 431 LAKRKSLFDDRPTEIQELTYIIKGDLNSLNQQIARLGEMPR-----GXXXXXXXXXXXXL 595
LAKRKSLFDD+ EI+ELTYIIK D+NSLN+QIA+L + R +
Sbjct: 118 LAKRKSLFDDKAVEIEELTYIIKQDINSLNKQIAQLQDFVRAKGSQSGRHLQTHSNTIVV 177
Query: 596 ALQSRLASMSNQFKQVLEVR 655
+LQS+LASMSN FK VLEVR
Sbjct: 178 SLQSKLASMSNDFKSVLEVR 197
Score = 48.4 bits (110), Expect = 2e-05
Identities = 30/70 (42%), Positives = 43/70 (61%), Gaps = 4/70 (5%)
Frame = +1
Query: 235 MASRDRTSEFISTVRSLQGRF----LNKPTVRDDRKAAVLETYSQFMSMAKVISKNITST 402
M+ RDRT EF+S +SLQ R NKP +R R+ S+F MAK I K++++T
Sbjct: 55 MSCRDRTQEFLSACKSLQTRQNGIQTNKPALRAVRQR------SEFTLMAKRIGKDLSNT 108
Query: 403 YTKLEKLALV 432
+ KLEKL ++
Sbjct: 109 FAKLEKLTIL 118
>BC002645-1|AAH02645.1| 267|Homo sapiens STX5 protein protein.
Length = 267
Score = 80.2 bits (189), Expect = 6e-15
Identities = 45/80 (56%), Positives = 54/80 (67%), Gaps = 5/80 (6%)
Frame = +2
Query: 431 LAKRKSLFDDRPTEIQELTYIIKGDLNSLNQQIARLGEMPR-----GXXXXXXXXXXXXL 595
LAKRKSLFDD+ EI+ELTYIIK D+NSLN+QIA+L + R +
Sbjct: 64 LAKRKSLFDDKAVEIEELTYIIKQDINSLNKQIAQLQDFVRAKGSQSGRHLQTHSNTIVV 123
Query: 596 ALQSRLASMSNQFKQVLEVR 655
+LQS+LASMSN FK VLEVR
Sbjct: 124 SLQSKLASMSNDFKSVLEVR 143
Score = 48.4 bits (110), Expect = 2e-05
Identities = 30/70 (42%), Positives = 43/70 (61%), Gaps = 4/70 (5%)
Frame = +1
Query: 235 MASRDRTSEFISTVRSLQGRF----LNKPTVRDDRKAAVLETYSQFMSMAKVISKNITST 402
M+ RDRT EF+S +SLQ R NKP +R R+ S+F MAK I K++++T
Sbjct: 1 MSCRDRTQEFLSACKSLQTRQNGIQTNKPALRAVRQR------SEFTLMAKRIGKDLSNT 54
Query: 403 YTKLEKLALV 432
+ KLEKL ++
Sbjct: 55 FAKLEKLTIL 64
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 78,412,631
Number of Sequences: 237096
Number of extensions: 1445286
Number of successful extensions: 2908
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2848
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2891
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7366354010
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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