Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0620
         (656 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g24350.1 68416.m03057 syntaxin, putative (SYP32) similar to S...    41   6e-04
At5g05760.1 68418.m00634 syntaxin 31 (SYP31) / SED5 identical to...    41   8e-04
At1g53180.1 68414.m06027 expressed protein                             35   0.055
At5g06905.1 68418.m00780 cytochrome P450 family protein similar ...    29   2.7  
At2g11520.1 68415.m01242 protein kinase family protein contains ...    28   6.3  

>At3g24350.1 68416.m03057 syntaxin, putative (SYP32) similar to
           SP|Q9FFK1 Syntaxin 31 (AtSYP31) (AtSED5) {Arabidopsis
           thaliana}, syntaxin 5A GB:NP_003155 from [Homo sapiens]
           (J. Mol. Neurosci. (1997) 8 (2), 159-161)
          Length = 347

 Score = 41.1 bits (92), Expect = 6e-04
 Identities = 19/36 (52%), Positives = 26/36 (72%)
 Frame = +2

Query: 431 LAKRKSLFDDRPTEIQELTYIIKGDLNSLNQQIARL 538
           LAKR S+FDD   EIQELT +IK ++++LN  +  L
Sbjct: 82  LAKRTSVFDDPTQEIQELTVVIKQEISALNSALVDL 117


>At5g05760.1 68418.m00634 syntaxin 31 (SYP31) / SED5 identical to
           SP|Q9FFK1 Syntaxin 31 (AtSYP31) (AtSED5) {Arabidopsis
           thaliana}
          Length = 336

 Score = 40.7 bits (91), Expect = 8e-04
 Identities = 17/36 (47%), Positives = 26/36 (72%)
 Frame = +2

Query: 431 LAKRKSLFDDRPTEIQELTYIIKGDLNSLNQQIARL 538
           LAK+ ++F+DR  EIQELT +I+ D+  LN  ++ L
Sbjct: 71  LAKQSTIFNDRTVEIQELTVLIRNDITGLNMALSDL 106


>At1g53180.1 68414.m06027 expressed protein
          Length = 358

 Score = 34.7 bits (76), Expect = 0.055
 Identities = 24/74 (32%), Positives = 35/74 (47%)
 Frame = +1

Query: 109 KGVHYGESRPYENSSNSKSTLILKSSDQDVFKFLEEFVFEPVMASRDRTSEFISTVRSLQ 288
           +G+ Y  S PY +SS S ST   K  D D+ K LE      ++ +    S    +   L 
Sbjct: 30  RGLRYCHSDPYPSSS-STSTSPEKMGDSDIGKVLEASTGRSLIRASSIDSREGGSQTKLT 88

Query: 289 GRFLNKPTVRDDRK 330
           GRF  K  V++ R+
Sbjct: 89  GRFSEKIRVQEQRQ 102


>At5g06905.1 68418.m00780 cytochrome P450 family protein similar to
           SP|Q42798|C931_SOYBN Cytochrome P450 93A1 (EC 1.14.-.-)
           {Glycine max}; contains Pfam profile PF00067: Cytochrome
           P450
          Length = 521

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 20/64 (31%), Positives = 29/64 (45%)
 Frame = +1

Query: 115 VHYGESRPYENSSNSKSTLILKSSDQDVFKFLEEFVFEPVMASRDRTSEFISTVRSLQGR 294
           +  G  R    S +  + LILK+ D D   F  +FVF P   +  + SEF +       R
Sbjct: 68  IRIGSLRVLVVSDSDTAKLILKTHDPD---FASKFVFGPRQFNVYKGSEFFNAPYGSYWR 124

Query: 295 FLNK 306
           F+ K
Sbjct: 125 FMKK 128


>At2g11520.1 68415.m01242 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 510

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 22/85 (25%), Positives = 35/85 (41%), Gaps = 3/85 (3%)
 Frame = +1

Query: 109 KGVHYGESRPYENSSNSKSTLILKSSDQDVFKFLEEFVFEPVMAS--RDRTSEFISTVRS 282
           K  H   ++PY+  S       +  +  +  +F E   F         D  S+   T+ S
Sbjct: 41  KSDHLTYTKPYQQGS----LFTINGNPVEKLRFCEALRFHKANGCIFEDSFSDDFCTIHS 96

Query: 283 LQGR-FLNKPTVRDDRKAAVLETYS 354
           L GR FL + TV+D + +     YS
Sbjct: 97  LLGRRFLEEKTVKDSKNSKPKTEYS 121


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,167,306
Number of Sequences: 28952
Number of extensions: 218976
Number of successful extensions: 516
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 509
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 516
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1373722560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)