Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0619
         (412 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1687.05 |pli1||SUMO E3 ligase Pli1|Schizosaccharomyces pombe...    34   0.010
SPAC23H3.06 |apl6||AP-3 adaptor complex subunit Apl6 |Schizosacc...    26   2.6  
SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|...    26   2.6  
SPAC694.06c |mrc1||mediator of replication checkpoint 1 |Schizos...    25   4.6  
SPBC19C2.01 |cdc28|prp8|ATP-dependent RNA helicase Cdc28 |Schizo...    25   6.1  
SPBC2G2.12 |||histidine-tRNA ligase|Schizosaccharomyces pombe|ch...    25   6.1  

>SPAC1687.05 |pli1||SUMO E3 ligase Pli1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 727

 Score = 33.9 bits (74), Expect = 0.010
 Identities = 13/49 (26%), Positives = 28/49 (57%)
 Frame = +3

Query: 264 DGDGVSTSIHNTPERPTKSERRSSATPPLDSETPEKILDRRLSKDKKSV 410
           DG+G+ST  + + ++PT+     ++ PP   +    ++D  +S D ++V
Sbjct: 411 DGEGISTMANKSNDQPTRRASTHNSGPPAKRKRESLVIDLTISDDDENV 459


>SPAC23H3.06 |apl6||AP-3 adaptor complex subunit Apl6
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 745

 Score = 25.8 bits (54), Expect = 2.6
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = +3

Query: 120 YESSSGESDDENQNDISDQQLQE 188
           YE+S+ ES+DE  +D S ++  E
Sbjct: 686 YETSTSESEDEETDDTSQEEDNE 708


>SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1184

 Score = 25.8 bits (54), Expect = 2.6
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = +3

Query: 285 SIHNTPERPTKSERRSSATPPLDSETPEKILDRRLSK 395
           S+ N  ER  +  + ++A     SET  + L+RRLSK
Sbjct: 628 SLANIDERIMRQNQAATANTNTVSETDIEALERRLSK 664


>SPAC694.06c |mrc1||mediator of replication checkpoint 1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1019

 Score = 25.0 bits (52), Expect = 4.6
 Identities = 9/25 (36%), Positives = 20/25 (80%)
 Frame = +3

Query: 138 ESDDENQNDISDQQLQEMIRRKKIE 212
           +SDDE+ +++  ++L+E+ R+K +E
Sbjct: 796 DSDDEDYSNLRREKLKELRRQKLLE 820


>SPBC19C2.01 |cdc28|prp8|ATP-dependent RNA helicase Cdc28
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1055

 Score = 24.6 bits (51), Expect = 6.1
 Identities = 12/32 (37%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
 Frame = +3

Query: 120 YESSSGESDDENQNDISD-QQLQEMIRRKKIE 212
           YE SS + + E  ND+ + ++ +E +RRK +E
Sbjct: 167 YEKSS-DPETERLNDLREREEFEERLRRKDLE 197


>SPBC2G2.12 |||histidine-tRNA ligase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 538

 Score = 24.6 bits (51), Expect = 6.1
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -1

Query: 115 PNPRPEAMAASAFDLPAFMALMRDAF 38
           P PR +  AA  FD+P  + L +D F
Sbjct: 475 PKPRQQFDAADKFDVPFAVILGQDEF 500


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,401,735
Number of Sequences: 5004
Number of extensions: 22887
Number of successful extensions: 84
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 83
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 84
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 142254980
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)