Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0619
         (412 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0087 + 14476539-14476675,14478876-14479635,14479720-144798...    32   0.21 
06_03_0259 - 18851809-18852561,18852659-18852895                       29   1.4  
12_02_1280 - 27517683-27517871,27517955-27518029,27518155-275183...    28   2.5  
08_01_0500 + 4338111-4338195,4339910-4340042,4340116-4340187,434...    28   2.5  
06_03_0257 + 18846638-18846850,18846934-18847689                       28   3.3  
03_02_0262 - 6944314-6944490,6944996-6945061,6945274-6945570           27   7.7  

>09_04_0087 + 14476539-14476675,14478876-14479635,14479720-14479871,
            14479958-14480024,14480632-14480831,14480915-14481068,
            14481585-14481669,14481766-14481857,14482575-14482766,
            14482867-14482992,14483072-14483125,14483494-14483550,
            14484509-14484606,14484703-14485038,14485116-14485203,
            14486891-14487016,14487082-14487138,14488054-14488133,
            14488228-14488270,14488948-14489034,14489331-14489420,
            14489996-14490054,14490141-14490231,14490330-14490495,
            14490662-14490755,14491787-14492909
          Length = 1537

 Score = 31.9 bits (69), Expect = 0.21
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = +3

Query: 264  DGDGVSTSIHNTPERPTKSERRSSATPPLDSETPE 368
            +G+GVS+S      +P+ S+  SSA PP     PE
Sbjct: 1473 EGEGVSSSEQKNTAKPSDSQGTSSARPPAPMRIPE 1507


>06_03_0259 - 18851809-18852561,18852659-18852895
          Length = 329

 Score = 29.1 bits (62), Expect = 1.4
 Identities = 13/24 (54%), Positives = 15/24 (62%)
 Frame = -3

Query: 110 PEARSDGGECLRLARLHGVDARCF 39
           P   SD GE LR+   HG+DAR F
Sbjct: 173 PNPNSDLGELLRVFETHGLDARDF 196


>12_02_1280 -
           27517683-27517871,27517955-27518029,27518155-27518318,
           27518424-27518538,27518783-27519074,27519162-27519318,
           27519438-27519510,27520309-27520377,27520471-27520694,
           27520800-27520981,27521067-27522064,27522335-27522580
          Length = 927

 Score = 28.3 bits (60), Expect = 2.5
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = +3

Query: 285 SIHNTPERPTKSERRSSATPPLDSETPEKILDRRLSKDK 401
           S H+  +   +SERRSS++   D+E  ++  DR    DK
Sbjct: 295 SAHHIRDESRESERRSSSSRHKDNERRDRSKDRYKESDK 333


>08_01_0500 +
           4338111-4338195,4339910-4340042,4340116-4340187,
           4340524-4340587,4341383-4341459,4341586-4341657,
           4341741-4341853,4341995-4342126,4342204-4342545,
           4342628-4343022,4343293-4343603,4343967-4344066
          Length = 631

 Score = 28.3 bits (60), Expect = 2.5
 Identities = 10/27 (37%), Positives = 18/27 (66%)
 Frame = -1

Query: 361 VSLSKGGVAEERRSDFVGLSGVLWIDV 281
           ++L+  G   E   D VGL+G+L++D+
Sbjct: 605 ITLASSGKGSELSDDAVGLTGILYLDI 631


>06_03_0257 + 18846638-18846850,18846934-18847689
          Length = 322

 Score = 27.9 bits (59), Expect = 3.3
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = -3

Query: 110 PEARSDGGECLRLARLHGVDAR 45
           P   SD GE LR+   HG+DAR
Sbjct: 165 PNPNSDLGELLRVFETHGLDAR 186


>03_02_0262 - 6944314-6944490,6944996-6945061,6945274-6945570
          Length = 179

 Score = 26.6 bits (56), Expect = 7.7
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = +3

Query: 123 ESSSGESDDENQNDISDQQLQEMIR 197
           +  +GE DDEN +D  D+ L  +++
Sbjct: 77  DDDAGEEDDENDDDDEDRSLDLLVK 101


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,970,656
Number of Sequences: 37544
Number of extensions: 178569
Number of successful extensions: 671
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 652
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 671
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 730630428
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)