Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0619
         (412 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_22840| Best HMM Match : F5_F8_type_C (HMM E-Value=0)                30   0.65 
SB_5192| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   1.1  
SB_45813| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.5  
SB_42464| Best HMM Match : Pro_isomerase (HMM E-Value=3.9e-06)         28   3.4  
SB_32197| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   4.5  
SB_25338| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   4.5  
SB_50112| Best HMM Match : PHD (HMM E-Value=0.0011)                    27   4.5  
SB_25059| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   4.5  
SB_7559| Best HMM Match : Metallothio_2 (HMM E-Value=2)                27   6.0  
SB_7691| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   7.9  

>SB_22840| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
          Length = 4002

 Score = 30.3 bits (65), Expect = 0.65
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = -2

Query: 150  RHRSRRCCFRKLPTRGPKRWRRVP 79
            R ++++ C R+  T  PKRWRR P
Sbjct: 2093 RFKTKKACERRCMTLPPKRWRRQP 2116


>SB_5192| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4865

 Score = 29.5 bits (63), Expect = 1.1
 Identities = 17/30 (56%), Positives = 19/30 (63%)
 Frame = +3

Query: 318  SERRSSATPPLDSETPEKILDRRLSKDKKS 407
            S RRSS TP  +S TPE  LDR +S   KS
Sbjct: 3019 SPRRSSLTPRRNSGTPES-LDRSMSPHDKS 3047


>SB_45813| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 146

 Score = 29.1 bits (62), Expect = 1.5
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = -3

Query: 71 ARLHGVDARCFPRAEFLQPG 12
          A +H VD + +P  EFLQPG
Sbjct: 11 ANIHCVDVKAYPCIEFLQPG 30


>SB_42464| Best HMM Match : Pro_isomerase (HMM E-Value=3.9e-06)
          Length = 454

 Score = 27.9 bits (59), Expect = 3.4
 Identities = 13/28 (46%), Positives = 20/28 (71%), Gaps = 2/28 (7%)
 Frame = +3

Query: 126 SSSGE--SDDENQNDISDQQLQEMIRRK 203
           SSSG+  SDDE Q +  DQ++++ +R K
Sbjct: 191 SSSGDDDSDDEKQEEKFDQKMRDKVRNK 218


>SB_32197| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 669

 Score = 27.5 bits (58), Expect = 4.5
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = +3

Query: 285 SIHNTPERPTKSERRSSATPPLDSETPEKILDRRLSKDK 401
           S+H   +  + S  RS  T PLDS +      R+ SK+K
Sbjct: 112 SLHQDTQNISSSTIRSPETSPLDSSSRNSSNTRKQSKEK 150


>SB_25338| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1360

 Score = 27.5 bits (58), Expect = 4.5
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = +3

Query: 285 SIHNTPERPTKSERRSSATPPLDSETPEKILDRRLSKDK 401
           S+H   +  + S  RS  T PLDS +      R+ SK+K
Sbjct: 136 SLHQDTQNISSSTIRSPETSPLDSSSRNSSNTRKQSKEK 174


>SB_50112| Best HMM Match : PHD (HMM E-Value=0.0011)
          Length = 357

 Score = 27.5 bits (58), Expect = 4.5
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = +3

Query: 285 SIHNTPERPTKSERRSSATPPLDSETPEKILDRRLSKDK 401
           S+H   +  + S  RS  T PLDS +      R+ SK+K
Sbjct: 189 SLHQDTQNISSSTIRSPETSPLDSSSRNSSNTRKQSKEK 227


>SB_25059| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 613

 Score = 27.5 bits (58), Expect = 4.5
 Identities = 13/32 (40%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
 Frame = +3

Query: 123 ESSSGESDDENQNDISDQQLQ-EMIRRKKIEF 215
           +S     DD++ +D SDQ  + EM+R+K+ EF
Sbjct: 374 DSDDESGDDDDGDDDSDQDKEREMLRKKEEEF 405


>SB_7559| Best HMM Match : Metallothio_2 (HMM E-Value=2)
          Length = 532

 Score = 27.1 bits (57), Expect = 6.0
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = -2

Query: 150 RHRSRRCCFRKLPTRGPKRWRRVPST 73
           +HR   CC  + PTR P R  + P T
Sbjct: 45  QHRQPFCCLGQEPTRNPTRTSKNPLT 70


>SB_7691| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 323

 Score = 26.6 bits (56), Expect = 7.9
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = +3

Query: 294 NTPERPTKSERRSSATPPLDSETPEKILDRRLSKDKK 404
           N+P+RPT++E   S    + S     +L+R+  +D K
Sbjct: 217 NSPQRPTETENEDSEDSEI-SRATHNVLERQRREDLK 252


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,077,284
Number of Sequences: 59808
Number of extensions: 202227
Number of successful extensions: 888
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 808
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 886
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 752487277
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)