Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0619
         (412 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AK223063-1|BAD96783.1|  437|Homo sapiens trans-golgi network pro...    31   2.0  
AJ006417-1|CAA07022.1| 1248|Homo sapiens beta-tubulin cofactor D...    30   3.4  
BC050588-1|AAH50588.1|  957|Homo sapiens melanoma antigen family...    29   7.9  
AL096827-1|CAI42970.1|  957|Homo sapiens melanoma antigen family...    29   7.9  
AJ549246-1|CAD70489.1|  105|Homo sapiens putative DYT3 protein p...    29   7.9  
AF490507-1|AAM08354.1|  957|Homo sapiens hepatocellular carcinom...    29   7.9  
AB046807-1|BAB13413.1|  991|Homo sapiens KIAA1587 protein protein.     29   7.9  

>AK223063-1|BAD96783.1|  437|Homo sapiens trans-golgi network
           protein 2 variant protein.
          Length = 437

 Score = 30.7 bits (66), Expect = 2.0
 Identities = 14/33 (42%), Positives = 17/33 (51%)
 Frame = +3

Query: 273 GVSTSIHNTPERPTKSERRSSATPPLDSETPEK 371
           G ST  H  P+ P  S  +SSA P    +TP K
Sbjct: 51  GGSTKSHPEPQTPKDSPSKSSAEPQTPEDTPNK 83


>AJ006417-1|CAA07022.1| 1248|Homo sapiens beta-tubulin cofactor D
            protein.
          Length = 1248

 Score = 29.9 bits (64), Expect = 3.4
 Identities = 18/47 (38%), Positives = 23/47 (48%)
 Frame = -2

Query: 309  ASLVCCGLMLILRHRHVRLGEPPLLSLWLSARTRFSYALSSPVVVDR 169
            A+LVC G + +  H H+RLG P       SA  RF   +  P  V R
Sbjct: 1099 ATLVCVGTVQMYAHTHLRLGAPGPHCAHGSAMPRFCGMVQFPGDVRR 1145


>BC050588-1|AAH50588.1|  957|Homo sapiens melanoma antigen family E,
           1 protein.
          Length = 957

 Score = 28.7 bits (61), Expect = 7.9
 Identities = 13/28 (46%), Positives = 15/28 (53%)
 Frame = +3

Query: 294 NTPERPTKSERRSSATPPLDSETPEKIL 377
           NT   PT SE  S++ PP  SE P   L
Sbjct: 137 NTSRPPTSSEEPSTSVPPTASEVPSTSL 164


>AL096827-1|CAI42970.1|  957|Homo sapiens melanoma antigen family E,
           1 protein.
          Length = 957

 Score = 28.7 bits (61), Expect = 7.9
 Identities = 13/28 (46%), Positives = 15/28 (53%)
 Frame = +3

Query: 294 NTPERPTKSERRSSATPPLDSETPEKIL 377
           NT   PT SE  S++ PP  SE P   L
Sbjct: 137 NTSRPPTSSEEPSTSVPPTASEVPSTSL 164


>AJ549246-1|CAD70489.1|  105|Homo sapiens putative DYT3 protein
           protein.
          Length = 105

 Score = 28.7 bits (61), Expect = 7.9
 Identities = 17/52 (32%), Positives = 22/52 (42%), Gaps = 9/52 (17%)
 Frame = -2

Query: 132 CCFRKLPTRGPKRW--------RRVPSTCP-PSWR*CAMLSSCRIPAARGST 4
           CC+   P R P+ W        RR  S C    W     LS+CR+  +  ST
Sbjct: 46  CCWTSPPARPPRPWACPGRPCRRRAASPCSCCGWNGSTWLSTCRVRLSTSST 97


>AF490507-1|AAM08354.1|  957|Homo sapiens hepatocellular
           carcinoma-associated protein HCA1 protein.
          Length = 957

 Score = 28.7 bits (61), Expect = 7.9
 Identities = 13/28 (46%), Positives = 15/28 (53%)
 Frame = +3

Query: 294 NTPERPTKSERRSSATPPLDSETPEKIL 377
           NT   PT SE  S++ PP  SE P   L
Sbjct: 137 NTSRPPTSSEEPSTSVPPTASEVPSTSL 164


>AB046807-1|BAB13413.1|  991|Homo sapiens KIAA1587 protein protein.
          Length = 991

 Score = 28.7 bits (61), Expect = 7.9
 Identities = 13/28 (46%), Positives = 15/28 (53%)
 Frame = +3

Query: 294 NTPERPTKSERRSSATPPLDSETPEKIL 377
           NT   PT SE  S++ PP  SE P   L
Sbjct: 171 NTSRPPTSSEEPSTSVPPTASEVPSTSL 198


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 50,045,173
Number of Sequences: 237096
Number of extensions: 848251
Number of successful extensions: 2910
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 2766
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2908
length of database: 76,859,062
effective HSP length: 83
effective length of database: 57,180,094
effective search space used: 3030544982
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)