Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0619
         (412 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U39849-2|AAN63462.2|  370|Caenorhabditis elegans Hypothetical pr...    29   1.7  
AF106583-12|AAD03133.1|  432|Caenorhabditis elegans Hypothetical...    27   5.3  
AF098501-1|AAC67404.2|  548|Caenorhabditis elegans Hypothetical ...    27   5.3  
Z81532-6|CAB04326.3| 1128|Caenorhabditis elegans Hypothetical pr...    27   7.0  
AF045641-2|AAC02578.2| 1370|Caenorhabditis elegans Hypothetical ...    27   7.0  
Z83230-10|CAL22704.2|  714|Caenorhabditis elegans Hypothetical p...    26   9.2  
Z34799-7|CAA84320.2|  574|Caenorhabditis elegans Hypothetical pr...    26   9.2  
AL021481-9|CAA16332.3|  714|Caenorhabditis elegans Hypothetical ...    26   9.2  

>U39849-2|AAN63462.2|  370|Caenorhabditis elegans Hypothetical
           protein C06A8.8a protein.
          Length = 370

 Score = 28.7 bits (61), Expect = 1.7
 Identities = 12/31 (38%), Positives = 21/31 (67%)
 Frame = +3

Query: 312 TKSERRSSATPPLDSETPEKILDRRLSKDKK 404
           + S+++SS +PPL   + ++ILD  L  D+K
Sbjct: 260 SSSKQQSSVSPPLSDRSKKQILDEILGIDEK 290


>AF106583-12|AAD03133.1|  432|Caenorhabditis elegans Hypothetical
           protein F23C8.11 protein.
          Length = 432

 Score = 27.1 bits (57), Expect = 5.3
 Identities = 13/46 (28%), Positives = 23/46 (50%)
 Frame = -2

Query: 219 ARTRFSYALSSPVVVDR*YHFDFRHRSRRCCFRKLPTRGPKRWRRV 82
           A  +FS+ALS  +   R YH+D   +    C  +   +G  +W ++
Sbjct: 362 ALRQFSHALSRAMANLRTYHYDVTTKKIEPCPMRYSCKGHLKWEQM 407


>AF098501-1|AAC67404.2|  548|Caenorhabditis elegans Hypothetical
           protein H28G03.2a protein.
          Length = 548

 Score = 27.1 bits (57), Expect = 5.3
 Identities = 14/35 (40%), Positives = 17/35 (48%)
 Frame = +3

Query: 300 PERPTKSERRSSATPPLDSETPEKILDRRLSKDKK 404
           P+ PT   R SS +PP    T E    +R   DKK
Sbjct: 185 PQSPTSRHRNSSFSPPRRHATREVHSRKRRHDDKK 219


>Z81532-6|CAB04326.3| 1128|Caenorhabditis elegans Hypothetical
           protein F36F2.3a protein.
          Length = 1128

 Score = 26.6 bits (56), Expect = 7.0
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = +3

Query: 303 ERPTKSERRSSATPPLDSETPEKILDRRLSKDK 401
           E+ +K E+R      LD+E  EK  +R+   DK
Sbjct: 803 EKKSKKEKRDEDEDDLDTEKKEKKKERKYQDDK 835


>AF045641-2|AAC02578.2| 1370|Caenorhabditis elegans Hypothetical
            protein F53H1.4a protein.
          Length = 1370

 Score = 26.6 bits (56), Expect = 7.0
 Identities = 10/25 (40%), Positives = 18/25 (72%)
 Frame = +3

Query: 132  SGESDDENQNDISDQQLQEMIRRKK 206
            SGESDDE++ DI +++ +    ++K
Sbjct: 1201 SGESDDEDEEDIVEEETRGRSAKRK 1225


>Z83230-10|CAL22704.2|  714|Caenorhabditis elegans Hypothetical
           protein Y43F4B.3 protein.
          Length = 714

 Score = 26.2 bits (55), Expect = 9.2
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = +3

Query: 123 ESSSGESDDENQNDISDQQLQEMIRRKKI 209
           ESS  ES  E++ D+S QQ  E I +  I
Sbjct: 198 ESSGRESSTEDEADVSHQQRVEKIAKNPI 226


>Z34799-7|CAA84320.2|  574|Caenorhabditis elegans Hypothetical
           protein F34D10.2 protein.
          Length = 574

 Score = 26.2 bits (55), Expect = 9.2
 Identities = 16/33 (48%), Positives = 19/33 (57%), Gaps = 3/33 (9%)
 Frame = +3

Query: 123 ESSSGESD---DENQNDISDQQLQEMIRRKKIE 212
           E S  E D   DE+Q  IS +Q  E IRRK I+
Sbjct: 140 EDSDDEEDSDEDEDQEYISYEQRMEKIRRKAIK 172


>AL021481-9|CAA16332.3|  714|Caenorhabditis elegans Hypothetical
           protein Y43F4B.3 protein.
          Length = 714

 Score = 26.2 bits (55), Expect = 9.2
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = +3

Query: 123 ESSSGESDDENQNDISDQQLQEMIRRKKI 209
           ESS  ES  E++ D+S QQ  E I +  I
Sbjct: 198 ESSGRESSTEDEADVSHQQRVEKIAKNPI 226


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,012,475
Number of Sequences: 27780
Number of extensions: 139344
Number of successful extensions: 591
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 562
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 591
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 662437636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)