Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0619
         (412 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.     24   0.77 
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    21   4.1  
AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    21   5.4  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    21   7.2  

>AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.
          Length = 247

 Score = 23.8 bits (49), Expect = 0.77
 Identities = 8/16 (50%), Positives = 13/16 (81%)
 Frame = -2

Query: 378 LVFFRVFRYLKAVLLK 331
           LVF+ VFRYL+  +++
Sbjct: 47  LVFYEVFRYLELAMIR 62


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 21.4 bits (43), Expect = 4.1
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -1

Query: 391 DSRLSSIFSGVSLSKGGV 338
           +S L+ +FSG   S GGV
Sbjct: 47  ESSLNDLFSGPEESSGGV 64


>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 21.0 bits (42), Expect = 5.4
 Identities = 6/21 (28%), Positives = 12/21 (57%)
 Frame = -3

Query: 74  LARLHGVDARCFPRAEFLQPG 12
           + + +G+    + + EFL PG
Sbjct: 54  IPKSYGIKCEIYAKCEFLNPG 74


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 20.6 bits (41), Expect = 7.2
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = -2

Query: 120 KLPTRGPKRWRRVPS 76
           +LP   PKR R++PS
Sbjct: 636 RLPPLPPKRIRKMPS 650


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 96,075
Number of Sequences: 438
Number of extensions: 1591
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10379628
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)