Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0619
         (412 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g62960.1 68414.m07109 1-aminocyclopropane-1-carboxylate synth...    28   2.1  
At3g59360.2 68416.m06620 nucleotide-sugar transporter family pro...    28   2.8  
At3g59360.1 68416.m06619 nucleotide-sugar transporter family pro...    28   2.8  
At1g55530.1 68414.m06353 zinc finger (C3HC4-type RING finger) fa...    27   3.7  
At4g32650.1 68417.m04647 inward rectifying potassium channel, pu...    26   8.6  
At4g26190.1 68417.m03770 expressed protein                             26   8.6  
At3g12560.1 68416.m01563 telomeric DNA-binding protein, putative...    26   8.6  
At2g16940.1 68415.m01952 RNA recognition motif (RRM)-containing ...    26   8.6  

>At1g62960.1 68414.m07109 1-aminocyclopropane-1-carboxylate
           synthase, putative / ACC synthase, putative similar to
           GI:1173638 [GB:U35779] from [Triticum aestivum] (Plant
           Mol. Biol. 31 (5), 1009-1020 (1996)), GI:1813331 from
           Vigna radiata
          Length = 557

 Score = 28.3 bits (60), Expect = 2.1
 Identities = 14/28 (50%), Positives = 20/28 (71%), Gaps = 1/28 (3%)
 Frame = -1

Query: 91  AASAFDLPAF-MALMRDAFLVPNSCSPG 11
           A+SA ++ +F +A   +AFLVP  CSPG
Sbjct: 244 ASSAIEILSFCLADSGNAFLVPTPCSPG 271


>At3g59360.2 68416.m06620 nucleotide-sugar transporter family
           protein low similarity to SP|P78382 CMP-sialic acid
           transporter {Homo sapiens}; contains Pfam profile
           PF04142: Nucleotide-sugar transporter
          Length = 405

 Score = 27.9 bits (59), Expect = 2.8
 Identities = 11/27 (40%), Positives = 20/27 (74%)
 Frame = -2

Query: 309 ASLVCCGLMLILRHRHVRLGEPPLLSL 229
           A ++   +ML+++ RH ++GE PLLS+
Sbjct: 83  AKVIFAIVMLLIQARHQKVGEKPLLSV 109


>At3g59360.1 68416.m06619 nucleotide-sugar transporter family
           protein low similarity to SP|P78382 CMP-sialic acid
           transporter {Homo sapiens}; contains Pfam profile
           PF04142: Nucleotide-sugar transporter
          Length = 405

 Score = 27.9 bits (59), Expect = 2.8
 Identities = 11/27 (40%), Positives = 20/27 (74%)
 Frame = -2

Query: 309 ASLVCCGLMLILRHRHVRLGEPPLLSL 229
           A ++   +ML+++ RH ++GE PLLS+
Sbjct: 83  AKVIFAIVMLLIQARHQKVGEKPLLSV 109


>At1g55530.1 68414.m06353 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam domain, PF00097: Zinc
           finger, C3HC4 type (RING finger)
          Length = 351

 Score = 27.5 bits (58), Expect = 3.7
 Identities = 11/28 (39%), Positives = 21/28 (75%)
 Frame = +3

Query: 123 ESSSGESDDENQNDISDQQLQEMIRRKK 206
           E  +  ++D+ +ND+ D QLQE++RR++
Sbjct: 89  EVQTENNEDDGENDL-DWQLQEILRRRR 115


>At4g32650.1 68417.m04647 inward rectifying potassium channel,
           putative (KAT3) (AKT4) (KC1) identical to K+ inward
           rectifying channel protein KC1 [Arabidopsis thaliana]
           gi|4090537|gb|AAC98810; similar to (KAT1) K+ channel
           [Arabidopsis thaliana] gi|1165000|emb|CAA63601;
           Shaker-type channel (1P/6TM), PMID:11500563
          Length = 662

 Score = 26.2 bits (55), Expect = 8.6
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = +2

Query: 35  EESIAHQRHEGGQVEGTRRHRFGPRV 112
           EE +   RHE GQ+E  RR     RV
Sbjct: 567 EEIVTVSRHENGQIEERRREGVPKRV 592


>At4g26190.1 68417.m03770 expressed protein
          Length = 1067

 Score = 26.2 bits (55), Expect = 8.6
 Identities = 11/38 (28%), Positives = 20/38 (52%)
 Frame = +3

Query: 264 DGDGVSTSIHNTPERPTKSERRSSATPPLDSETPEKIL 377
           D +GVS   H   +R  K++    +   +DSE+ + +L
Sbjct: 609 DAEGVSDDGHKREKRKIKNKTNCESVATMDSESVQSLL 646


>At3g12560.1 68416.m01563 telomeric DNA-binding protein, putative
           similar to telomeric DNA-binding protein 1 [Arabidopsis
           thaliana] gi|13641340|gb|AAK31590
          Length = 619

 Score = 26.2 bits (55), Expect = 8.6
 Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
 Frame = +3

Query: 300 PERPTKSERRSSATPPLDSETP--EKILDRR 386
           P  PT    RS+A+P LDS  P  + ++D R
Sbjct: 420 PTDPTSLSERSAASPMLDSGIPHADDVIDSR 450


>At2g16940.1 68415.m01952 RNA recognition motif (RRM)-containing
           protein
          Length = 561

 Score = 26.2 bits (55), Expect = 8.6
 Identities = 15/35 (42%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
 Frame = +3

Query: 303 ERPTKSERRSSAT-PPLDSETPEKILDRRLSKDKK 404
           ER    ER  S    P + ET ++  DRR  KDKK
Sbjct: 133 ERHRSQEREKSLEIEPKERETKDRDRDRRRHKDKK 167


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,589,469
Number of Sequences: 28952
Number of extensions: 128734
Number of successful extensions: 475
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 468
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 474
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 615542944
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)