Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0618
         (680 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC13G6.07c |rps601|rps6-1|40S ribosomal protein S6|Schizosacch...   164   1e-41
SPAPB1E7.12 |rps602|rps6-2, rps6|40S ribosomal protein S6|Schizo...   164   1e-41
SPAC2F7.03c |pom1||DYRK family protein kinase Pom1|Schizosacchar...    31   0.20 

>SPAC13G6.07c |rps601|rps6-1|40S ribosomal protein
           S6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 239

 Score =  164 bits (398), Expect = 1e-41
 Identities = 75/114 (65%), Positives = 87/114 (76%)
 Frame = +3

Query: 18  NVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQGFPM 197
           N+SYPA G QKL E+ D+ +LR+F EKRMG EV  D +G E+ GYV ++ GGNDKQGFPM
Sbjct: 4   NISYPANGTQKLIEIDDDRRLRVFMEKRMGQEVPGDSVGPEFAGYVFKITGGNDKQGFPM 63

Query: 198 KQGVLTNSRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLSVLALGYCAQG 359
            QGVL   RVRLL+  GH CYRPRRDGERKRKSVRGCIV  +L+VLAL    QG
Sbjct: 64  FQGVLLPHRVRLLLRAGHPCYRPRRDGERKRKSVRGCIVGQDLAVLALAIIKQG 117



 Score =  118 bits (285), Expect = 6e-28
 Identities = 63/114 (55%), Positives = 78/114 (68%), Gaps = 1/114 (0%)
 Frame = +1

Query: 340 LVIVRKGAQEIPGLTDGNVPRRLGPKRASKIRKLFNLSKEDDVRRYVVKR-VLPAKEGKE 516
           L I+++G Q+IPGLTD  VP+RLGPKRASKIR+ FNLSKEDDVR++V++R V+P KEGK 
Sbjct: 111 LAIIKQGEQDIPGLTDVTVPKRLGPKRASKIRRFFNLSKEDDVRQFVIRREVVPKKEGK- 169

Query: 517 NAKPRHKAPKIQRLVTPVVLQXXXXXXXXXXXXXXXXXSSEAEYAKLLAQRKKE 678
             KP  KAPKIQRLVTP  LQ                    AE+A+L+A+R  E
Sbjct: 170 --KPYTKAPKIQRLVTPRTLQHKRHRFALKRRQAEKNREEAAEFAQLMAKRVAE 221


>SPAPB1E7.12 |rps602|rps6-2, rps6|40S ribosomal protein
           S6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 239

 Score =  164 bits (398), Expect = 1e-41
 Identities = 75/114 (65%), Positives = 87/114 (76%)
 Frame = +3

Query: 18  NVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQGFPM 197
           N+SYPA G QKL E+ D+ +LR+F EKRMG EV  D +G E+ GYV ++ GGNDKQGFPM
Sbjct: 4   NISYPANGTQKLIEIDDDRRLRVFMEKRMGQEVPGDSVGPEFAGYVFKITGGNDKQGFPM 63

Query: 198 KQGVLTNSRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLSVLALGYCAQG 359
            QGVL   RVRLL+  GH CYRPRRDGERKRKSVRGCIV  +L+VLAL    QG
Sbjct: 64  FQGVLLPHRVRLLLRAGHPCYRPRRDGERKRKSVRGCIVGQDLAVLALAIVKQG 117



 Score =  119 bits (286), Expect = 4e-28
 Identities = 64/114 (56%), Positives = 78/114 (68%), Gaps = 1/114 (0%)
 Frame = +1

Query: 340 LVIVRKGAQEIPGLTDGNVPRRLGPKRASKIRKLFNLSKEDDVRRYVVKR-VLPAKEGKE 516
           L IV++G Q+IPGLTD  VP+RLGPKRASKIR+ FNLSKEDDVR++V++R V+P KEGK 
Sbjct: 111 LAIVKQGEQDIPGLTDVTVPKRLGPKRASKIRRFFNLSKEDDVRQFVIRREVVPKKEGK- 169

Query: 517 NAKPRHKAPKIQRLVTPVVLQXXXXXXXXXXXXXXXXXSSEAEYAKLLAQRKKE 678
             KP  KAPKIQRLVTP  LQ                    AE+A+L+A+R  E
Sbjct: 170 --KPYTKAPKIQRLVTPRTLQHKRHRFALKRRQAEKNREEAAEFAQLMAKRVAE 221


>SPAC2F7.03c |pom1||DYRK family protein kinase
           Pom1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1087

 Score = 30.7 bits (66), Expect = 0.20
 Identities = 12/27 (44%), Positives = 19/27 (70%)
 Frame = -3

Query: 390 SISQSRNFLGTLAHNNQEPRPRDWRQQ 310
           SIS S++F  +L++ N+  +P DW QQ
Sbjct: 175 SISNSKSFGTSLSYYNRSSKPSDWNQQ 201


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,738,233
Number of Sequences: 5004
Number of extensions: 55578
Number of successful extensions: 133
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 131
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 313902888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)