Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0618
(680 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_03_0207 - 15455163-15455389,15455623-15455895,15455991-154560... 148 5e-36
07_03_1309 + 25669394-25669399,25669520-25669584,25670543-256706... 145 3e-35
02_05_0956 - 33064104-33066425 31 1.1
10_07_0139 + 13327851-13327880,13327999-13329049,13329089-133296... 29 2.6
06_01_0033 - 346273-347355 28 7.9
03_02_0109 + 5671418-5671631,5675610-5675690,5676249-5676340,567... 28 7.9
>03_03_0207 -
15455163-15455389,15455623-15455895,15455991-15456099,
15456186-15456243,15457002-15457066,15457190-15457195
Length = 245
Score = 148 bits (358), Expect = 5e-36
Identities = 69/116 (59%), Positives = 87/116 (75%), Gaps = 2/116 (1%)
Frame = +3
Query: 18 NVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQGFPM 197
N++ P TGCQK E+ D+ KLR FY+KR+ EV D LG+E+KGYV ++ GG DKQGFPM
Sbjct: 4 NIANPTTGCQKKLEIDDDQKLRAFYDKRISQEVSGDALGEEFKGYVFKIMGGCDKQGFPM 63
Query: 198 KQGVLTNSRVRLLMSKGHSCYR--PRRDGERKRKSVRGCIVDANLSVLALGYCAQG 359
KQGVLT+ RVRLL+ +G C+R RRDGER+RKSVRGCIV +LSV+ L +G
Sbjct: 64 KQGVLTSGRVRLLLHRGTPCFRGYGRRDGERRRKSVRGCIVSQDLSVINLVIVKKG 119
Score = 111 bits (267), Expect = 5e-25
Identities = 63/115 (54%), Positives = 73/115 (63%), Gaps = 2/115 (1%)
Frame = +1
Query: 340 LVIVRKGAQEIPGLTDGNVPRRLGPKRASKIRKLFNLSKEDDVRRYV--VKRVLPAKEGK 513
LVIV+KG ++PGLTD PR GPKRASKIRKLFNL+K+DDVR+YV +R K GK
Sbjct: 113 LVIVKKGDNDLPGLTDTEKPRMRGPKRASKIRKLFNLAKDDDVRKYVNTYRRTFTTKNGK 172
Query: 514 ENAKPRHKAPKIQRLVTPVVLQXXXXXXXXXXXXXXXXXSSEAEYAKLLAQRKKE 678
+ + KAPKIQRLVTP+ LQ S AEY KLLAQR KE
Sbjct: 173 KVS----KAPKIQRLVTPLTLQRKRARIAQKKQRIAKKKSEAAEYQKLLAQRLKE 223
>07_03_1309 +
25669394-25669399,25669520-25669584,25670543-25670600,
25670683-25670791,25670872-25671144,25671348-25671589
Length = 250
Score = 145 bits (351), Expect = 3e-35
Identities = 68/116 (58%), Positives = 86/116 (74%), Gaps = 2/116 (1%)
Frame = +3
Query: 18 NVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQGFPM 197
N++ P TGCQK E+ D+ KLR F++KR+ EV D LG+E+KGYV ++ GG DKQGFPM
Sbjct: 4 NIANPTTGCQKKLEIDDDQKLRAFFDKRISQEVSGDALGEEFKGYVFKIMGGCDKQGFPM 63
Query: 198 KQGVLTNSRVRLLMSKGHSCYR--PRRDGERKRKSVRGCIVDANLSVLALGYCAQG 359
KQGVLT RVRLL+ +G C+R RRDGER+RKSVRGCIV +LSV+ L +G
Sbjct: 64 KQGVLTAGRVRLLLHRGTPCFRGYGRRDGERRRKSVRGCIVSQDLSVINLVIVKKG 119
Score = 113 bits (271), Expect = 2e-25
Identities = 64/115 (55%), Positives = 73/115 (63%), Gaps = 2/115 (1%)
Frame = +1
Query: 340 LVIVRKGAQEIPGLTDGNVPRRLGPKRASKIRKLFNLSKEDDVRRYV--VKRVLPAKEGK 513
LVIV+KG ++PGLTD PR GPKRASKIRKLFNLSK+DDVR+YV +R K GK
Sbjct: 113 LVIVKKGENDLPGLTDTEKPRMRGPKRASKIRKLFNLSKDDDVRKYVNTYRRTFTTKNGK 172
Query: 514 ENAKPRHKAPKIQRLVTPVVLQXXXXXXXXXXXXXXXXXSSEAEYAKLLAQRKKE 678
+ + KAPKIQRLVTP+ LQ S AEY KLLAQR KE
Sbjct: 173 KVS----KAPKIQRLVTPLTLQRKRARIADKKKRIAKKKSEAAEYQKLLAQRLKE 223
>02_05_0956 - 33064104-33066425
Length = 773
Score = 30.7 bits (66), Expect = 1.1
Identities = 22/61 (36%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
Frame = -3
Query: 504 LGWEHAFDDITTYIIFFAKVEQLTDFGSTFGT*TAGYISISQSRNFL-GTLAHNNQEPRP 328
+G EHA DD++TYII A V T + +I+ +FL G L + EP P
Sbjct: 23 VGVEHATDDVSTYIIHVAHVHATP---PTHASQCMDQHAIAHYTSFLQGILPSHLSEPTP 79
Query: 327 R 325
R
Sbjct: 80 R 80
>10_07_0139 +
13327851-13327880,13327999-13329049,13329089-13329648,
13329757-13329904,13330935-13331024,13331148-13331208,
13331301-13331450,13331571-13331629,13332148-13332282,
13333028-13333119,13333210-13333278
Length = 814
Score = 29.5 bits (63), Expect = 2.6
Identities = 13/53 (24%), Positives = 32/53 (60%)
Frame = +1
Query: 403 RLGPKRASKIRKLFNLSKEDDVRRYVVKRVLPAKEGKENAKPRHKAPKIQRLV 561
++ PK+A ++ + + +DD+ R V + +P+++ + A+ ++PK +R V
Sbjct: 325 KVEPKKAHCSDRISHKTTQDDMERKVPSKYIPSEKKGKTAESCSRSPKRERRV 377
>06_01_0033 - 346273-347355
Length = 360
Score = 27.9 bits (59), Expect = 7.9
Identities = 20/46 (43%), Positives = 27/46 (58%)
Frame = +1
Query: 268 AAMERENVNQFVDVLLTPISRSWLLVIVRKGAQEIPGLTDGNVPRR 405
A + R N+ +V LT RS LVIV GA++IPG T N+ +R
Sbjct: 88 AFLPRVNIVSGTEVSLT---RSSDLVIVTAGARQIPGETRLNLLQR 130
>03_02_0109 +
5671418-5671631,5675610-5675690,5676249-5676340,
5676433-5676513,5676594-5676691,5676872-5676953,
5677050-5677088
Length = 228
Score = 27.9 bits (59), Expect = 7.9
Identities = 18/61 (29%), Positives = 31/61 (50%)
Frame = -3
Query: 534 MSGFSIFFSFLGWEHAFDDITTYIIFFAKVEQLTDFGSTFGT*TAGYISISQSRNFLGTL 355
++GF +FFSFLG FD +I + L+ G T G + ++ +N+ GT+
Sbjct: 104 LTGFGVFFSFLGIIFFFD---KGLIAMGNILFLSGLGLTIGLKSTMQF-FTKPKNYKGTI 159
Query: 354 A 352
+
Sbjct: 160 S 160
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,020,512
Number of Sequences: 37544
Number of extensions: 416828
Number of successful extensions: 1251
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1210
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1245
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1721314888
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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