Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0618
         (680 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_48378| Best HMM Match : Ribosomal_S6e (HMM E-Value=0)              142   2e-34
SB_47786| Best HMM Match : Ank (HMM E-Value=4.4e-30)                   38   0.006
SB_6097| Best HMM Match : Chitin_bind_3 (HMM E-Value=0.7)              32   0.37 
SB_59495| Best HMM Match : RnaseH (HMM E-Value=0.0011)                 30   2.0  
SB_53135| Best HMM Match : RnaseH (HMM E-Value=0.0016)                 30   2.0  
SB_7395| Best HMM Match : SURF6 (HMM E-Value=1.8)                      29   4.6  
SB_54650| Best HMM Match : IncA (HMM E-Value=0.84)                     29   4.6  
SB_41444| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.1  
SB_48231| Best HMM Match : TUDOR (HMM E-Value=1.9e-28)                 28   8.0  
SB_29770| Best HMM Match : ig (HMM E-Value=3.4e-05)                    28   8.0  
SB_27725| Best HMM Match : RVT_1 (HMM E-Value=1.9e-19)                 28   8.0  
SB_5302| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   8.0  
SB_4034| Best HMM Match : Exo_endo_phos (HMM E-Value=9.7e-06)          28   8.0  
SB_2184| Best HMM Match : AMP-binding (HMM E-Value=8.5e-06)            28   8.0  
SB_32833| Best HMM Match : RVT_1 (HMM E-Value=2)                       28   8.0  
SB_8888| Best HMM Match : Fer4 (HMM E-Value=3.9)                       28   8.0  
SB_5647| Best HMM Match : ResIII (HMM E-Value=1.1)                     28   8.0  

>SB_48378| Best HMM Match : Ribosomal_S6e (HMM E-Value=0)
          Length = 212

 Score =  142 bits (344), Expect = 2e-34
 Identities = 63/83 (75%), Positives = 71/83 (85%)
 Frame = +3

Query: 111 EVEADQLGDEWKGYVLRVAGGNDKQGFPMKQGVLTNSRVRLLMSKGHSCYRPRRDGERKR 290
           EV  + LGDEWKGYV R+ GGNDKQGFPMKQG++TN RVRLL+SKGHSCYRPRR GERKR
Sbjct: 2   EVSGECLGDEWKGYVFRITGGNDKQGFPMKQGIMTNGRVRLLLSKGHSCYRPRRTGERKR 61

Query: 291 KSVRGCIVDANLSVLALGYCAQG 359
           KSVRGCIVD+ LSVL+L    +G
Sbjct: 62  KSVRGCIVDSQLSVLSLVIVKKG 84



 Score =  136 bits (330), Expect = 1e-32
 Identities = 70/113 (61%), Positives = 80/113 (70%)
 Frame = +1

Query: 340 LVIVRKGAQEIPGLTDGNVPRRLGPKRASKIRKLFNLSKEDDVRRYVVKRVLPAKEGKEN 519
           LVIV+KG Q+IPGLTD  +PRRLGPKR  KIRK+FNLSKEDDVR+YV++R LP KEGK  
Sbjct: 78  LVIVKKGEQDIPGLTDNTIPRRLGPKRVGKIRKMFNLSKEDDVRQYVIRRPLPEKEGK-- 135

Query: 520 AKPRHKAPKIQRLVTPVVLQXXXXXXXXXXXXXXXXXSSEAEYAKLLAQRKKE 678
            K + KAPKIQRLVTPVVLQ                    A+YAKLLA+R KE
Sbjct: 136 -KAKSKAPKIQRLVTPVVLQRKRKRLALKRQRAQKCKQEAADYAKLLAKRAKE 187


>SB_47786| Best HMM Match : Ank (HMM E-Value=4.4e-30)
          Length = 796

 Score = 38.3 bits (85), Expect = 0.006
 Identities = 18/55 (32%), Positives = 29/55 (52%)
 Frame = -1

Query: 251 VAL*HQKTNTAVCQDALFHRESLLVVAASDTKYIALPFIA*LISLYFGAHALFVK 87
           V L  Q+ + A+  D L H +SL V+  SD + ++LP I   +  Y   H L ++
Sbjct: 252 VTLGEQEADAAIGHDPLLHGKSLFVITTSDPEDVSLPLIPQALPRYLHGHTLVIE 306


>SB_6097| Best HMM Match : Chitin_bind_3 (HMM E-Value=0.7)
          Length = 325

 Score = 32.3 bits (70), Expect = 0.37
 Identities = 24/89 (26%), Positives = 40/89 (44%), Gaps = 2/89 (2%)
 Frame = -3

Query: 399 GYISISQSRNFLGTLAHNNQEPRPRDWRQQYIHELIYVFSLHR-GAVCNMSG-PLTSEDE 226
           GY+SI  +RN+ G L   ++ P  R+W    ++   +V+     G  C + G P      
Sbjct: 21  GYLSIPPARNYCGAL--KDKGPCVRNWTPNELNCGGFVYQWREAGGKCGVCGDPYGKTQR 78

Query: 225 HGCLSGRPVSSGILACRCRQRHEVHSPSI 139
           H    G   + G++  R R + + H P I
Sbjct: 79  H--TEGGEFAKGVITGRRRFKLKEHLPKI 105


>SB_59495| Best HMM Match : RnaseH (HMM E-Value=0.0011)
          Length = 515

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +2

Query: 467 YVVMSSNACSQPRKEKKMLNPDIRHLRSRG 556
           Y V  +  C+ PR   K+L P + HLR +G
Sbjct: 50  YSVFPNGLCTCPRNFTKLLKPPLSHLRLKG 79


>SB_53135| Best HMM Match : RnaseH (HMM E-Value=0.0016)
          Length = 515

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +2

Query: 467 YVVMSSNACSQPRKEKKMLNPDIRHLRSRG 556
           Y V  +  C+ PR   K+L P + HLR +G
Sbjct: 50  YSVFPNGLCTCPRNFTKLLKPPLSHLRLKG 79


>SB_7395| Best HMM Match : SURF6 (HMM E-Value=1.8)
          Length = 1365

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 13/30 (43%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
 Frame = +3

Query: 117 EADQLGDEWKGYVL--RVAGGNDKQGFPMK 200
           E D+ G EW+G+V      G  D QG+ MK
Sbjct: 815 EEDRTGQEWEGHVCDKEPEGKRDNQGYKMK 844


>SB_54650| Best HMM Match : IncA (HMM E-Value=0.84)
          Length = 291

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = +1

Query: 388 GNVPRRLGPKRASKIRKLFNLSKEDDVRRYVVK 486
           G+   + GP + SKI K+    ++DDV+  VVK
Sbjct: 221 GSEAAKTGPNKLSKIDKVILAVEDDDVQEIVVK 253


>SB_41444| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 194

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 12/40 (30%), Positives = 23/40 (57%)
 Frame = +1

Query: 436 KLFNLSKEDDVRRYVVKRVLPAKEGKENAKPRHKAPKIQR 555
           + F+++KEDD+  Y++   L  +  K NA   ++ P+  R
Sbjct: 137 RAFDVTKEDDITMYIIITPLFMRARKNNAMEYNQKPRDPR 176


>SB_48231| Best HMM Match : TUDOR (HMM E-Value=1.9e-28)
          Length = 1282

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 25/97 (25%), Positives = 43/97 (44%), Gaps = 7/97 (7%)
 Frame = +1

Query: 304  DVLLTPISRSWLLVIVRKGAQEIPGLTDGNVPRRLGPKRAS-------KIRKLFNLSKED 462
            D+L   +  S L  I+ K +       D ++PRR+  +R +       K RK+F+L    
Sbjct: 1179 DLLPQRLLLSQLKPILLKISINASRFNDKDIPRRIKQERQNNRYTDHRKFRKVFSLPSRL 1238

Query: 463  DVRRYVVKRVLPAKEGKENAKPRHKAPKIQRLVTPVV 573
             +   + KR+LP   G+  A  +        + TP+V
Sbjct: 1239 KIPANLAKRLLPPPPGRNVAVQKRIFHGHVPVTTPLV 1275


>SB_29770| Best HMM Match : ig (HMM E-Value=3.4e-05)
          Length = 454

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
 Frame = -3

Query: 609 LLQSETMTS-TLQNYRGD*PLDLRCLMSGFSI 517
           L+QSE+ T  T  NY    P++L C   GF +
Sbjct: 329 LIQSESTTQVTWSNYADRDPIELNCTFDGFPV 360


>SB_27725| Best HMM Match : RVT_1 (HMM E-Value=1.9e-19)
          Length = 262

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 13/29 (44%), Positives = 19/29 (65%)
 Frame = -3

Query: 537 LMSGFSIFFSFLGWEHAFDDITTYIIFFA 451
           L  G S+FF+F+  E AFD +   II++A
Sbjct: 91  LAKGKSLFFAFVDLEKAFDRVPRDIIWWA 119


>SB_5302| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 949

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = -3

Query: 537 LMSGFSIFFSFLGWEHAFDDITTYIIFFA 451
           L  G S+FF+F+  E AFD +   I+++A
Sbjct: 628 LAKGKSLFFAFVDLEKAFDRVPRVILWWA 656


>SB_4034| Best HMM Match : Exo_endo_phos (HMM E-Value=9.7e-06)
          Length = 609

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = -3

Query: 537 LMSGFSIFFSFLGWEHAFDDITTYIIFFA 451
           L  G S+FF+F+  E AFD +   I+++A
Sbjct: 545 LAKGKSLFFAFVDLEKAFDRVPRVILWWA 573


>SB_2184| Best HMM Match : AMP-binding (HMM E-Value=8.5e-06)
          Length = 757

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 20/70 (28%), Positives = 35/70 (50%), Gaps = 7/70 (10%)
 Frame = +1

Query: 355 KGAQEIPGLTDGNV----PRRLGPK---RASKIRKLFNLSKEDDVRRYVVKRVLPAKEGK 513
           +GA+++P L +G V    P + G K   R++ +++L     E DVR +   RV   ++  
Sbjct: 267 RGARDVPPLEEGGVVRMRPFKFGKKHWDRSTVVKRLGEYEVETDVRTHRRHRVGLKEQNL 326

Query: 514 ENAKPRHKAP 543
             A P+   P
Sbjct: 327 PPATPQEADP 336


>SB_32833| Best HMM Match : RVT_1 (HMM E-Value=2)
          Length = 317

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = -3

Query: 537 LMSGFSIFFSFLGWEHAFDDITTYIIFFA 451
           L  G S+FF+F+  E AFD +   I+++A
Sbjct: 196 LAKGKSLFFAFVDLEKAFDRVPRVILWWA 224


>SB_8888| Best HMM Match : Fer4 (HMM E-Value=3.9)
          Length = 689

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 25/83 (30%), Positives = 34/83 (40%), Gaps = 2/83 (2%)
 Frame = +1

Query: 298 FVDVLLTPISRSWLLVIVRKGAQEIPGLTDGNVPRRLG--PKRASKIRKLFNLSKEDDVR 471
           F  V L  IS +WL  +V  G   +PG     +   L   PK   K++K      E DV 
Sbjct: 474 FSYVNLAFISETWLKDVVSDGVVHMPGKCGIALETCLDFCPKSGEKVKK--EAEHEHDVD 531

Query: 472 RYVVKRVLPAKEGKENAKPRHKA 540
           +   +R +P         PR KA
Sbjct: 532 KNSAQRGIPVASVHGADIPRSKA 554


>SB_5647| Best HMM Match : ResIII (HMM E-Value=1.1)
          Length = 1101

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 11/37 (29%), Positives = 22/37 (59%)
 Frame = +1

Query: 421 ASKIRKLFNLSKEDDVRRYVVKRVLPAKEGKENAKPR 531
           A  ++ + +    DDV+  ++K ++P KEG E+  P+
Sbjct: 22  AGLVQNILDEDIPDDVKHRLLKPLVPEKEGPESLDPK 58


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,534,665
Number of Sequences: 59808
Number of extensions: 464529
Number of successful extensions: 1299
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1200
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1297
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1757375282
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)