Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0618
         (680 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g31700.1 68417.m04500 40S ribosomal protein S6 (RPS6A) riboso...   145   3e-35
At5g10360.1 68418.m01202 40S ribosomal protein S6 (RPS6B)             144   6e-35
At3g24080.1 68416.m03024 KRR1 family protein contains Pfam PF051...    30   1.2  
At1g21740.1 68414.m02721 expressed protein contains Pfam domains...    29   2.8  
At1g67280.1 68414.m07657 lactoylglutathione lyase, putative / gl...    29   3.8  
At3g05330.1 68416.m00581 cyclin family low similarity to microtu...    28   5.0  
At2g16390.1 68415.m01876 SNF2 domain-containing protein / helica...    28   6.6  
At2g39620.1 68415.m04857 pentatricopeptide (PPR) repeat-containi...    27   8.7  

>At4g31700.1 68417.m04500 40S ribosomal protein S6 (RPS6A) ribosomal
           protein S6, Arabidopsis thaliana, PID:g2662469
          Length = 250

 Score =  145 bits (351), Expect = 3e-35
 Identities = 70/116 (60%), Positives = 85/116 (73%), Gaps = 2/116 (1%)
 Frame = +3

Query: 18  NVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQGFPM 197
           NV+ P TGCQK  E+ D+ KLR FY+KR+  EV  D LG+E+KGYV ++ GG DKQGFPM
Sbjct: 4   NVANPTTGCQKKLEIDDDQKLRAFYDKRISQEVSGDALGEEFKGYVFKIKGGCDKQGFPM 63

Query: 198 KQGVLTNSRVRLLMSKGHSCYR--PRRDGERKRKSVRGCIVDANLSVLALGYCAQG 359
           KQGVLT  RVRLL+ +G  C+R   RR GER+RKSVRGCIV  +LSVL L    +G
Sbjct: 64  KQGVLTPGRVRLLLHRGTPCFRGHGRRTGERRRKSVRGCIVSPDLSVLNLVIVKKG 119



 Score =  108 bits (260), Expect = 3e-24
 Identities = 63/115 (54%), Positives = 71/115 (61%), Gaps = 2/115 (1%)
 Frame = +1

Query: 340 LVIVRKGAQEIPGLTDGNVPRRLGPKRASKIRKLFNLSKEDDVRRYV--VKRVLPAKEGK 513
           LVIV+KG  ++PGLTD   PR  GPKRASKIRKLFNL KEDDVR YV   +R    K+GK
Sbjct: 113 LVIVKKGENDLPGLTDTEKPRMRGPKRASKIRKLFNLKKEDDVRTYVNTYRRKFTNKKGK 172

Query: 514 ENAKPRHKAPKIQRLVTPVVLQXXXXXXXXXXXXXXXXXSSEAEYAKLLAQRKKE 678
           E +    KAPKIQRLVTP+ LQ                 S  A+Y KLLA R KE
Sbjct: 173 EVS----KAPKIQRLVTPLTLQRKRARIADKKKKIAKANSDAADYQKLLASRLKE 223


>At5g10360.1 68418.m01202 40S ribosomal protein S6 (RPS6B)
          Length = 249

 Score =  144 bits (348), Expect = 6e-35
 Identities = 69/116 (59%), Positives = 85/116 (73%), Gaps = 2/116 (1%)
 Frame = +3

Query: 18  NVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQGFPM 197
           NV+ P TGCQK  E+ D+ KLR F++KR+  EV  D LG+E+KGYV ++ GG DKQGFPM
Sbjct: 4   NVANPTTGCQKKLEIDDDQKLRAFFDKRLSQEVSGDALGEEFKGYVFKIMGGCDKQGFPM 63

Query: 198 KQGVLTNSRVRLLMSKGHSCYR--PRRDGERKRKSVRGCIVDANLSVLALGYCAQG 359
           KQGVLT  RVRLL+ +G  C+R   RR GER+RKSVRGCIV  +LSVL L    +G
Sbjct: 64  KQGVLTPGRVRLLLHRGTPCFRGHGRRTGERRRKSVRGCIVSPDLSVLNLVIVKKG 119



 Score =  109 bits (262), Expect = 2e-24
 Identities = 62/115 (53%), Positives = 72/115 (62%), Gaps = 2/115 (1%)
 Frame = +1

Query: 340 LVIVRKGAQEIPGLTDGNVPRRLGPKRASKIRKLFNLSKEDDVRRYV--VKRVLPAKEGK 513
           LVIV+KG  ++PGLTD   PR  GPKRASKIRKLFNL KEDDVR+YV   +R    K+GK
Sbjct: 113 LVIVKKGVSDLPGLTDTEKPRMRGPKRASKIRKLFNLGKEDDVRKYVNTYRRTFTNKKGK 172

Query: 514 ENAKPRHKAPKIQRLVTPVVLQXXXXXXXXXXXXXXXXXSSEAEYAKLLAQRKKE 678
           + +    KAPKIQRLVTP+ LQ                 S  A+Y KLLA R KE
Sbjct: 173 KVS----KAPKIQRLVTPLTLQRKRARIADKKKRIAKANSDAADYQKLLASRLKE 223


>At3g24080.1 68416.m03024 KRR1 family protein contains Pfam PF05178:
           Krr1 family
          Length = 638

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 17/51 (33%), Positives = 30/51 (58%), Gaps = 2/51 (3%)
 Frame = +1

Query: 379 LTDGNVPRRLGPKRASKIRKLFNLSKEDDVRRYVVKRV--LPAKEGKENAK 525
           + +G+V ++   ++A +  K   + KEDDVR+  +KR+  +  KE KE  K
Sbjct: 288 VVEGSVRKKDNARKAQRKNKDERMKKEDDVRKEELKRLKNVKKKEIKEKMK 338


>At1g21740.1 68414.m02721 expressed protein contains Pfam domains,
           PF04782: Protein of unknown function (DUF632) and
           PF04783: Protein of unknown function (DUF630)
          Length = 953

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 15/33 (45%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
 Frame = +3

Query: 45  QKLF-EVVDEHKLRIFYEKRMGAEVEADQLGDE 140
           +KL+ EV DE KLR+ YE++     + D LG E
Sbjct: 602 KKLYKEVKDEEKLRVVYEEKCRTLKKLDSLGAE 634


>At1g67280.1 68414.m07657 lactoylglutathione lyase, putative /
           glyoxalase I, putative similar to putative
           lactoylglutathione lyase SP:Q39366, GI:2494843 from
           [Brassica oleracea]
          Length = 350

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 17/56 (30%), Positives = 26/56 (46%)
 Frame = +3

Query: 30  PATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQGFPM 197
           P   CQ +  V D  +   FYEK  G E+   +   E+K Y + + G   +  FP+
Sbjct: 216 PEPLCQVMLRVGDLDRAIKFYEKAFGMELLRTRDNPEYK-YTIAMMGYGPEDKFPV 270


>At3g05330.1 68416.m00581 cyclin family low similarity to
           microtubule-binding protein TANGLED1 [Zea mays]
           GI:11228986; contains Pfam profile PF00134: Cyclin,
           N-terminal domain
          Length = 444

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 14/32 (43%), Positives = 17/32 (53%)
 Frame = -1

Query: 428 LEARLGPRRRGTFPSVNPGISWAPLRTITKSQ 333
           L+A L P R G F   +P  S +P R   KSQ
Sbjct: 383 LQAFLSPTRNGNFCKKSPKASISPTRVCNKSQ 414


>At2g16390.1 68415.m01876 SNF2 domain-containing protein / helicase
           domain-containing protein low similarity to RAD54
           [Drosophila melanogaster] GI:1765914; contains Pfam
           profiles PF00271: Helicase conserved C-terminal domain,
           PF00176: SNF2 family N-terminal domain
          Length = 888

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = +1

Query: 367 EIPGLTDGNVPRRLGPKRASKIRKL 441
           E+PGL D  V   L PK+ ++++KL
Sbjct: 620 ELPGLADFTVVLNLSPKQLNEVKKL 644


>At2g39620.1 68415.m04857 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 836

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
 Frame = +3

Query: 327 SVLALGYCAQGCPGNSWID*W-KCTPPSRSQTCF 425
           S++  G+C+Q   GNS +D + KC     S+ CF
Sbjct: 629 SLIQCGFCSQTPVGNSLVDMYAKCGMIESSEKCF 662


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,778,751
Number of Sequences: 28952
Number of extensions: 310998
Number of successful extensions: 896
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 871
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 890
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1438152744
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)