Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0617
         (625 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23C4.03 |||haspin related kinase|Schizosaccharomyces pombe|c...    61   1e-10
SPAC3H8.05c |||conserved fungal protein|Schizosaccharomyces pomb...    26   3.8  
SPBC1734.08 |hse1||STAM like protein Hse1|Schizosaccharomyces po...    26   5.1  
SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr 2|||Ma...    26   5.1  
SPBC1683.13c |||transcription factor |Schizosaccharomyces pombe|...    25   6.7  
SPAC6F12.15c |cut9|dre1|anaphase-promoting complex subunit Cut9|...    25   8.9  

>SPAC23C4.03 |||haspin related kinase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 488

 Score = 61.3 bits (142), Expect = 1e-10
 Identities = 25/53 (47%), Positives = 34/53 (64%)
 Frame = +1

Query: 76  YNDLADDDGLFDAVGDYQFEVYRLMKSKLGNDWKNFEPYTNILWLHYTVDKMI 234
           YN+  D D LF+ V DYQF++YRLM       W  F P TN+LWLHY + +++
Sbjct: 375 YNEFNDPD-LFNGVDDYQFDIYRLMSRVTKGRWAQFFPITNVLWLHYLIHQLL 426


>SPAC3H8.05c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1073

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 14/44 (31%), Positives = 17/44 (38%)
 Frame = -1

Query: 298 PSICLCNACVSLYWFFCSVGPLSFYQQCNVATVCLYMVQSSSNH 167
           P I  C  C     +  SV P+SF+            V SSS H
Sbjct: 334 PYIVFCGDCSDTLVYDVSVSPMSFFGSLIACAPMWDFVYSSSRH 377


>SPBC1734.08 |hse1||STAM like protein Hse1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 373

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 27/131 (20%), Positives = 57/131 (43%), Gaps = 1/131 (0%)
 Frame = +1

Query: 1   QEFGTREPLSRVSLPASAPARCAALYNDLADDDGLFDAVGDYQFEVYRLMKSKLGNDWK- 177
           Q+   R+  +  + PAS  +R  ALY+  A + G    +   + ++  +++S   + WK 
Sbjct: 199 QKTNQRQESNLATSPASTVSRVRALYDFAATEQG---ELSFKKGDIILVLESVYKDWWKG 255

Query: 178 NFEPYTNILWLHYTVDKMITALRYKRTNTKIHKHYIDKLKGIKNRILDYKSATDFVLTDN 357
           + +    I  ++Y    +   +  +R +  + +   D L  I + +LD  S T     D+
Sbjct: 256 SCKNAVGIFPVNYVQRVVEPTIEQQRQSAHMEQQVFDALPQI-DELLDTLSTTSPDAADD 314

Query: 358 EY*QNNEQIML 390
           +  Q     M+
Sbjct: 315 DALQGKYHAMI 325


>SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 918

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 15/51 (29%), Positives = 24/51 (47%)
 Frame = +1

Query: 61  RCAALYNDLADDDGLFDAVGDYQFEVYRLMKSKLGNDWKNFEPYTNILWLH 213
           RC     DL DD  L   +GD+  +     K   G D  +F+   ++LW++
Sbjct: 265 RCVKEMMDLLDDSTLLIVMGDHGMD----NKGNHGGD--SFDEINSVLWMY 309


>SPBC1683.13c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 618

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 13/39 (33%), Positives = 17/39 (43%), Gaps = 3/39 (7%)
 Frame = +3

Query: 432 GDVCTCYKNVTYNVHNIC---FQKTIDAKRIIYNALVKC 539
           GDVC  Y  +  N  ++C   +     A R I NA   C
Sbjct: 541 GDVCNIYLEIITNALDVCANVWPLASQASRAILNAYKSC 579


>SPAC6F12.15c |cut9|dre1|anaphase-promoting complex subunit
           Cut9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 671

 Score = 25.0 bits (52), Expect = 8.9
 Identities = 15/51 (29%), Positives = 25/51 (49%), Gaps = 5/51 (9%)
 Frame = -2

Query: 324 VIENSILD-----ALQFVYVMLVYLCIGSFVA*GRYHFINSVM*PQYVCIW 187
           +I N ++D     A+ ++ V + YLC+       RY   +S M PQ+   W
Sbjct: 360 LISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAW 410


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,222,515
Number of Sequences: 5004
Number of extensions: 45328
Number of successful extensions: 133
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 133
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 275671126
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)