Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0617
         (625 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1421 - 26451012-26451155,26451256-26451322,26451605-264516...    54   7e-08
12_01_0247 - 1836971-1837810                                           28   5.2  
06_03_1347 - 29492460-29494685                                         27   9.2  

>07_03_1421 -
           26451012-26451155,26451256-26451322,26451605-26451657,
           26451736-26451806,26453340-26453482,26453858-26453919,
           26454008-26454100,26454203-26454314,26454432-26454547,
           26454625-26454787,26454829-26455349,26455429-26455528,
           26457472-26457552,26457666-26457877
          Length = 645

 Score = 54.4 bits (125), Expect = 7e-08
 Identities = 36/98 (36%), Positives = 51/98 (52%), Gaps = 1/98 (1%)
 Frame = +1

Query: 67  AALYNDLADDDGLFDAVG-DYQFEVYRLMKSKLGNDWKNFEPYTNILWLHYTVDKMITAL 243
           A L+ DL+ D  LF+    D Q E YR MK    + W+   P TN++WL Y VD ++   
Sbjct: 537 AILFLDLSTDPALFEGPKRDKQAETYRKMKQITNDYWEGSFPKTNVVWLIYLVD-IVLQK 595

Query: 244 RYKRTNTKIHKHYIDKLKGIKNRILDYKSATDFVLTDN 357
           RY    +K  +    +L+  K R+  Y SA D  LTD+
Sbjct: 596 RYSTFTSKDDR----ELRAFKKRLAKYDSAKD-CLTDS 628


>12_01_0247 - 1836971-1837810
          Length = 279

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 13/21 (61%), Positives = 14/21 (66%), Gaps = 1/21 (4%)
 Frame = -2

Query: 582 TWLKALPY-LRHPSADTLLMH 523
           TW+KALPY   H  AD LL H
Sbjct: 25  TWIKALPYSALHRRADELLAH 45


>06_03_1347 - 29492460-29494685
          Length = 741

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 15/38 (39%), Positives = 20/38 (52%)
 Frame = +1

Query: 49  SAPARCAALYNDLADDDGLFDAVGDYQFEVYRLMKSKL 162
           S P R  A YNDL+ D   +   G    EVY++ K+ L
Sbjct: 669 SFPERLVAWYNDLSLDGLTYGMRGAMSPEVYKVAKAAL 706


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,918,065
Number of Sequences: 37544
Number of extensions: 240641
Number of successful extensions: 617
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 608
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 617
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1513903616
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)