Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0617
(625 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_51313| Best HMM Match : Pkinase (HMM E-Value=0.43) 83 1e-16
SB_30907| Best HMM Match : THAP (HMM E-Value=0.0033) 29 3.1
SB_5806| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.1
SB_39310| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.1
SB_54228| Best HMM Match : TBCC (HMM E-Value=7.8) 28 5.4
SB_49789| Best HMM Match : IncA (HMM E-Value=0.47) 28 5.4
SB_48610| Best HMM Match : DUF759 (HMM E-Value=4.6) 28 5.4
SB_27385| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.4
SB_3233| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.4
SB_56144| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.4
SB_7898| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.4
SB_805| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.4
SB_30220| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.4
SB_52862| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.4
SB_45774| Best HMM Match : DUF1261 (HMM E-Value=4.4) 27 9.4
SB_10908| Best HMM Match : Cytochrom_B562 (HMM E-Value=3.4) 27 9.4
>SB_51313| Best HMM Match : Pkinase (HMM E-Value=0.43)
Length = 456
Score = 83.4 bits (197), Expect = 1e-16
Identities = 35/91 (38%), Positives = 57/91 (62%)
Frame = +1
Query: 73 LYNDLADDDGLFDAVGDYQFEVYRLMKSKLGNDWKNFEPYTNILWLHYTVDKMITALRYK 252
++ DL++D+ +F GDYQF++YR M+ +DW ++PY+N+LWLHY DK++ Y
Sbjct: 362 VFCDLSEDESMFTGQGDYQFDIYRKMRVHNRDDWAAYKPYSNVLWLHYLTDKILNNKEYP 421
Query: 253 RTNTKIHKHYIDKLKGIKNRILDYKSATDFV 345
N + K KLK ++ + DY+SA + V
Sbjct: 422 NRNKTLEK----KLKCVQQTLTDYQSAQEVV 448
>SB_30907| Best HMM Match : THAP (HMM E-Value=0.0033)
Length = 892
Score = 29.1 bits (62), Expect = 3.1
Identities = 23/79 (29%), Positives = 36/79 (45%), Gaps = 6/79 (7%)
Frame = +1
Query: 139 YRLMKSKLGNDWKNFEPYTNILWLHYTVDKMI---TALRYKRTNTKIHKHYIDKL---KG 300
Y+ ++SK NDWK F+ Y N + + K I A R N + I++L K
Sbjct: 327 YKAIRSKDVNDWKIFKKYRNFVNCQIKIAKQIYYDNAFRENEGNIRNTWKVINELTLRKT 386
Query: 301 IKNRILDYKSATDFVLTDN 357
+ I + K D +TD+
Sbjct: 387 NNSTIKEVKLDDDHSITDS 405
>SB_5806| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 418
Score = 29.1 bits (62), Expect = 3.1
Identities = 34/130 (26%), Positives = 58/130 (44%), Gaps = 13/130 (10%)
Frame = +1
Query: 124 YQFEVYRL--MKSKLGNDWKNFEPYTNILWLHYTVDKMITALRYKRTNTKIHKHYIDKLK 297
+Q +V+++ ++SK NDWK F+ Y N + + K I Y NT + + I +
Sbjct: 34 HQRDVFKIKAIRSKDVNDWKIFKKYRNFVNCQIKIAKQI----YYGNNTNLMNN-ISDIY 88
Query: 298 GIKNRILDYKSATD--FVLTDNEY*QNNEQI---------MLYHLILYNYTKWIH*EMFA 444
G+ I + T+ L D Y + ++I + YH ++Y Y K
Sbjct: 89 GLTQLIKEATRITENKATLLDVFYTNHPDRIACSGVSHVGISYHSLVYAYRKL----SIV 144
Query: 445 RVTKMLLIMY 474
R+TK I+Y
Sbjct: 145 RLTKNTTIIY 154
>SB_39310| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 402
Score = 28.7 bits (61), Expect = 4.1
Identities = 16/52 (30%), Positives = 25/52 (48%)
Frame = -1
Query: 328 SCNREFYS*CPSICLCNACVSLYWFFCSVGPLSFYQQCNVATVCLYMVQSSS 173
+C RE Y+ +I CN V W S+G LS + VC+ ++ + S
Sbjct: 68 NCEREQYTDVKAISPCNMDVYPLWSMTSLGVLSLLVITSNIAVCILVLCTRS 119
>SB_54228| Best HMM Match : TBCC (HMM E-Value=7.8)
Length = 330
Score = 28.3 bits (60), Expect = 5.4
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = -1
Query: 376 RCFVNIRCPLKQNRLHSCNREFYS 305
R ++CPL ++RL S N+ FYS
Sbjct: 21 RILNELQCPLPKDRLFSWNKNFYS 44
>SB_49789| Best HMM Match : IncA (HMM E-Value=0.47)
Length = 674
Score = 28.3 bits (60), Expect = 5.4
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = -1
Query: 376 RCFVNIRCPLKQNRLHSCNREFYS 305
R ++CPL ++RL S N+ FYS
Sbjct: 366 RILNELQCPLPKDRLFSWNKNFYS 389
>SB_48610| Best HMM Match : DUF759 (HMM E-Value=4.6)
Length = 454
Score = 28.3 bits (60), Expect = 5.4
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = -1
Query: 376 RCFVNIRCPLKQNRLHSCNREFYS 305
R ++CPL ++RL S N+ FYS
Sbjct: 146 RILNELQCPLPKDRLFSWNKNFYS 169
>SB_27385| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 456
Score = 28.3 bits (60), Expect = 5.4
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = -1
Query: 376 RCFVNIRCPLKQNRLHSCNREFYS 305
R ++CPL ++RL S N+ FYS
Sbjct: 366 RILNELQCPLPKDRLFSWNKNFYS 389
>SB_3233| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 287
Score = 28.3 bits (60), Expect = 5.4
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = -1
Query: 376 RCFVNIRCPLKQNRLHSCNREFYS 305
R ++CPL ++RL S N+ FYS
Sbjct: 142 RILNELQCPLPKDRLFSWNKNFYS 165
>SB_56144| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 233
Score = 28.3 bits (60), Expect = 5.4
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = -1
Query: 376 RCFVNIRCPLKQNRLHSCNREFYS 305
R ++CPL ++RL S N+ FYS
Sbjct: 196 RILNELQCPLPKDRLFSWNKNFYS 219
>SB_7898| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 787
Score = 28.3 bits (60), Expect = 5.4
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = -1
Query: 376 RCFVNIRCPLKQNRLHSCNREFYS 305
R ++CPL ++RL S N+ FYS
Sbjct: 142 RILNELQCPLPKDRLFSWNKNFYS 165
>SB_805| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1270
Score = 28.3 bits (60), Expect = 5.4
Identities = 25/92 (27%), Positives = 36/92 (39%), Gaps = 1/92 (1%)
Frame = +1
Query: 82 DLADDDGLFDAVGDYQFEVYRLMKSKLGNDWK-NFEPYTNILWLHYTVDKMITALRYKRT 258
D A D L V DY ++ RL + D + + Y + LH T T L
Sbjct: 1097 DYATDTRLHALVTDYAIDM-RLHVTDYATDTRLHVTDYATDMRLHVTDYATDTRLHVTDY 1155
Query: 259 NTKIHKHYIDKLKGIKNRILDYKSATDFVLTD 354
T + H D +K + DY + T +TD
Sbjct: 1156 ATDMRLHVTDYATDMKLHVTDYATDTRLHVTD 1187
>SB_30220| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 566
Score = 27.5 bits (58), Expect = 9.4
Identities = 14/44 (31%), Positives = 18/44 (40%)
Frame = -1
Query: 286 LCNACVSLYWFFCSVGPLSFYQQCNVATVCLYMVQSSSNHCPTC 155
+C C L W+ + P V T C + SSS CP C
Sbjct: 430 ICLDCEGLLWYPVQIKPCGH----RVCTKCYTKLLSSSARCPGC 469
>SB_52862| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 469
Score = 27.5 bits (58), Expect = 9.4
Identities = 24/86 (27%), Positives = 41/86 (47%), Gaps = 8/86 (9%)
Frame = +1
Query: 124 YQFEVYRL--MKSKLGNDWKNFEPYTNILWLHYTVDKMI---TALRYKRTNTKIHKHYID 288
+Q +V+++ ++SK NDWK F+ Y N + + K I A R N + I+
Sbjct: 296 HQRDVFKIKAIRSKDVNDWKIFKKYRNFVNCQIKIAKQIYYDNAFRENEGNIRNTWKVIN 355
Query: 289 KL---KGIKNRILDYKSATDFVLTDN 357
+L K + I + K D +TD+
Sbjct: 356 ELISRKTNNSTIKEVKLDDDHSITDS 381
>SB_45774| Best HMM Match : DUF1261 (HMM E-Value=4.4)
Length = 392
Score = 27.5 bits (58), Expect = 9.4
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = -1
Query: 376 RCFVNIRCPLKQNRLHSCNREFYS 305
R ++CPL +++L S N+ FYS
Sbjct: 34 RILSELQCPLPRDKLFSWNKNFYS 57
>SB_10908| Best HMM Match : Cytochrom_B562 (HMM E-Value=3.4)
Length = 389
Score = 27.5 bits (58), Expect = 9.4
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = -1
Query: 376 RCFVNIRCPLKQNRLHSCNREFYS 305
R ++CPL +++L S N+ FYS
Sbjct: 265 RILNELQCPLPEDKLFSWNKNFYS 288
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,011,673
Number of Sequences: 59808
Number of extensions: 321768
Number of successful extensions: 758
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 711
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 756
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1548368000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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