Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0617
         (625 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g09450.1 68414.m01057 haspin-related similar to haspin (GI:92...    54   1e-07
At5g58590.1 68418.m07342 Ran-binding protein 1, putative / RanBP...    28   4.4  
At3g04220.1 68416.m00446 disease resistance protein (TIR-NBS-LRR...    28   4.4  
At1g06900.1 68414.m00733 peptidase M16 family protein / insulina...    28   4.4  
At2g21850.1 68415.m02596 DC1 domain-containing protein contains ...    28   5.8  

>At1g09450.1 68414.m01057 haspin-related similar to haspin
           (GI:9229937) {Mus musculus} and haploid germ
           cell-specific nuclear protein kinase (GI:13561418) {Mus
           musculus}
          Length = 599

 Score = 53.6 bits (123), Expect = 1e-07
 Identities = 34/92 (36%), Positives = 51/92 (55%), Gaps = 1/92 (1%)
 Frame = +1

Query: 73  LYNDLADDDGLFDAV-GDYQFEVYRLMKSKLGNDWKNFEPYTNILWLHYTVDKMITALRY 249
           L+ DL  D  LF    GD Q E YR MK+   + W+     TN+LWL Y VD ++T   +
Sbjct: 499 LFLDLTSDPYLFKGPKGDKQSETYRKMKAVTEDYWEGSFARTNVLWLIYLVDILLTKKSF 558

Query: 250 KRTNTKIHKHYIDKLKGIKNRILDYKSATDFV 345
           +R++    KH   +L+ +K R+  Y+SA + V
Sbjct: 559 ERSS----KHE-RELRSLKKRMEKYESAKEAV 585


>At5g58590.1 68418.m07342 Ran-binding protein 1, putative / RanBP1,
           putative strong similarity to Ran binding proteins from
           Arabidopsis thaliana atranbp1a [Arabidopsis thaliana]
           GI:2058282, atranbp1b [Arabidopsis thaliana] GI:2058284;
           contains Pfam profile PF00638: RanBP1 domain
          Length = 219

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 25/82 (30%), Positives = 34/82 (41%), Gaps = 4/82 (4%)
 Frame = +1

Query: 109 DAVGDYQFEVYRLMKSKLGNDWKNFEPYTNILWLHYTVDKMITALRYKRTNTKIHKHYID 288
           DAV D + ++YR  K   GN WK     T  L  H    K+   +R  +T      H I 
Sbjct: 46  DAVLDLKSKMYRFDKE--GNQWKERGAGTVKLLKHKETGKVRLVMRQSKTLKICANHLIS 103

Query: 289 KLKGIKNRILDYKS----ATDF 342
               ++    + KS    ATDF
Sbjct: 104 SGMSVQEHSGNEKSCLWHATDF 125


>At3g04220.1 68416.m00446 disease resistance protein (TIR-NBS-LRR
           class), putative domain signature TIR-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 896

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 13/50 (26%), Positives = 23/50 (46%)
 Frame = +1

Query: 154 SKLGNDWKNFEPYTNILWLHYTVDKMITALRYKRTNTKIHKHYIDKLKGI 303
           SKL   W+  +P  N+ WL  T  + +  L    T T + +  I++   +
Sbjct: 684 SKLEKLWEGIQPLRNLEWLDLTCSRNLKELPDLSTATNLQRLSIERCSSL 733


>At1g06900.1 68414.m00733 peptidase M16 family protein / insulinase
           family protein contains Pfam domain, PF05193: Peptidase
           M16 inactive domain; similar to insulin-degrading enzyme
           (Insulysin, Insulinase, Insulin protease) [Mouse]
           SWISS-PROT:Q9JHR7
          Length = 1023

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 12/27 (44%), Positives = 14/27 (51%)
 Frame = +3

Query: 408 QLYKMDTLGDVCTCYKNVTYNVHNICF 488
           QL   + LG V  C   +TY VH  CF
Sbjct: 849 QLRTKEQLGYVVECGPRLTYRVHGFCF 875


>At2g21850.1 68415.m02596 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 772

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
 Frame = -1

Query: 295 SICL-CNACVSLYWFFCSVGPLSFYQQCNVATVCLYMVQSSSNH 167
           S CL C   +  Y + CS   +SF+ +C+ A +  +  Q+S NH
Sbjct: 541 SKCLACKLEIKKYGYHCSTCNISFHIKCSKAVI--FPQQTSHNH 582


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,019,997
Number of Sequences: 28952
Number of extensions: 213587
Number of successful extensions: 583
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 574
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 583
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1265787216
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)