Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0616
         (687 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23C4.06c |||methyltransferase |Schizosaccharomyces pombe|chr...    27   3.4  
SPBC725.07 |pex5||peroxisomal targeting signal receptor |Schizos...    26   5.9  
SPBC609.05 |pob3||FACT complex component Pob3|Schizosaccharomyce...    25   7.8  

>SPAC23C4.06c |||methyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 327

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 15/35 (42%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
 Frame = +1

Query: 286 LTLNAKNIPYDLVFINLDQK-PEWIFNFSPKGTVP 387
           L L  +N   D + IN D   P W   FSPK T+P
Sbjct: 91  LHLENQNSIVDSIHINADTVLPVWSEAFSPKSTLP 125


>SPBC725.07 |pex5||peroxisomal targeting signal receptor
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 598

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 19/63 (30%), Positives = 29/63 (46%)
 Frame = +1

Query: 445 LDEKYPEIPLQASDPLRRAQDKILVESFAPAQSAYYTAAFNAQALEPSMVETYHKDLRDY 624
           L +K+ E   Q S+ L + +D    +S       +     NA  LEP+ +E Y K   D+
Sbjct: 167 LAKKFEEAS-QISNKLEKEKDATGSKSIEELWEEHQKQLKNA-GLEPASLEEYQKQWEDF 224

Query: 625 KKS 633
            KS
Sbjct: 225 LKS 227


>SPBC609.05 |pob3||FACT complex component Pob3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 512

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = +1

Query: 298 AKNIPYDLVFINLDQKP 348
           AK + YD +++NL +KP
Sbjct: 3   AKTVQYDNIYLNLSEKP 19


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,646,216
Number of Sequences: 5004
Number of extensions: 51739
Number of successful extensions: 117
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 117
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 317927284
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)