Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0616
         (687 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_8108| Best HMM Match : GST_N (HMM E-Value=3.9e-14)                 111   4e-25
SB_3922| Best HMM Match : No HMM Matches (HMM E-Value=.)               89   4e-18
SB_48592| Best HMM Match : Galactosyl_T (HMM E-Value=1.5e-26)          49   3e-06
SB_25847| Best HMM Match : Methuselah_N (HMM E-Value=0.48)             32   0.50 
SB_9381| Best HMM Match : TAF4 (HMM E-Value=2.9)                       32   0.50 
SB_26062| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.1  
SB_41537| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.1  

>SB_8108| Best HMM Match : GST_N (HMM E-Value=3.9e-14)
          Length = 238

 Score =  111 bits (268), Expect = 4e-25
 Identities = 58/156 (37%), Positives = 89/156 (57%), Gaps = 4/156 (2%)
 Frame = +1

Query: 184 MSEKHLQTGDVLPPYSGKLRVFAMRFCPYAERTVLTLNAKNIPYDLVFINLDQKPEW-IF 360
           M + HL  GD  PP   KLR+++MRFCPYAER  L L AK + Y+ + INL  KP+W + 
Sbjct: 1   MPQSHLSNGDPRPPPGDKLRLYSMRFCPYAERPRLVLAAKGVDYECININLKNKPDWYLA 60

Query: 361 NFSPKGTVPAL*YEPGKALFDSNIINVYLDEKYPEIPLQASDPLRRAQDKILVESFAPAQ 540
             +P+G VP +    G+ L +S +   YLDE +P+ P+  SD   + + ++L++ F    
Sbjct: 61  EPNPRGLVPMIEMPDGRLLPESLLCCEYLDELFPQNPMYPSDAFEKNRQRLLIDRFGKVT 120

Query: 541 SAYYTAA---FNAQALEPSMVETYHKDLRDYKKSLK 639
           S++Y       +  AL+    ET +K+L  Y+  LK
Sbjct: 121 SSFYQMLMRDMDEDALK-GQTETLNKELSLYENELK 155


>SB_3922| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 236

 Score = 88.6 bits (210), Expect = 4e-18
 Identities = 49/121 (40%), Positives = 69/121 (57%), Gaps = 3/121 (2%)
 Frame = +1

Query: 175 SFNMSEKHLQTGDVLPPY-SGKLRVFAMRFCPYAERTVLTLNAKNIPYDLVFINLDQKPE 351
           S  M   H+  G   P     KLR+++MRFCP+AER  L L AK + Y+ V +NL  KPE
Sbjct: 8   SITMPVTHISKGSSRPAKPQNKLRLYSMRFCPFAERPRLVLAAKGLDYECVNVNLKSKPE 67

Query: 352 WIFNFSP--KGTVPAL*YEPGKALFDSNIINVYLDEKYPEIPLQASDPLRRAQDKILVES 525
           W F   P  +G VP L    GK + +S II  +L++ Y +IPL   DP  +++ K+L + 
Sbjct: 68  W-FQTHPDCEGKVPTLETMDGKLIPESVIICEFLEDYYRKIPLYPCDPYAKSRQKLLAQR 126

Query: 526 F 528
           F
Sbjct: 127 F 127


>SB_48592| Best HMM Match : Galactosyl_T (HMM E-Value=1.5e-26)
          Length = 492

 Score = 49.2 bits (112), Expect = 3e-06
 Identities = 25/87 (28%), Positives = 50/87 (57%), Gaps = 2/87 (2%)
 Frame = +1

Query: 259 FCPYAERTVLTLNAKNIPYDLVFIN-LDQKPEWIFNFSPKGTVPAL*YEPGKALFDSNII 435
           FCP+A+R  + + AK   ++ +  N  ++ PEW+   +P G VP + +  G A+++S+I 
Sbjct: 269 FCPFAQRAWIAMLAKKAEFEYIEQNPYNKTPEWL-AINPNGLVPVIVHN-GNAVYESSIC 326

Query: 436 NVYLDEKY-PEIPLQASDPLRRAQDKI 513
             ++DE +   + +   DP +RA  ++
Sbjct: 327 IEFIDEAFSTPVTILPKDPYKRAHGRM 353


>SB_25847| Best HMM Match : Methuselah_N (HMM E-Value=0.48)
          Length = 390

 Score = 31.9 bits (69), Expect = 0.50
 Identities = 25/80 (31%), Positives = 36/80 (45%), Gaps = 1/80 (1%)
 Frame = +2

Query: 356 SSTLARRVLCQLCNMNLVRHSLTATL*MFILMKSIQRFLCKHQTLCAELKTK-FSLRALL 532
           S  L  R L   CN+NLVRH     L      +++Q        LC  +KT+   LR LL
Sbjct: 221 SRNLVPRGLLMRCNLNLVRHD--ERLRQLCRQQTLQSSSKILYELCNSVKTEVLRLRGLL 278

Query: 533 QHNQLTIQQHSMHKLSSQAW 592
           Q  + T  Q + ++ +   W
Sbjct: 279 QDARKTAFQSTDYQRALSIW 298


>SB_9381| Best HMM Match : TAF4 (HMM E-Value=2.9)
          Length = 210

 Score = 31.9 bits (69), Expect = 0.50
 Identities = 25/80 (31%), Positives = 36/80 (45%), Gaps = 1/80 (1%)
 Frame = +2

Query: 356 SSTLARRVLCQLCNMNLVRHSLTATL*MFILMKSIQRFLCKHQTLCAELKTK-FSLRALL 532
           S  L  R L   CN+NLVRH     L      +++Q        LC  +KT+   LR LL
Sbjct: 41  SRNLVPRGLLMRCNLNLVRHD--ERLRQLCRQQTLQSSSKILYELCNSVKTEVLRLRGLL 98

Query: 533 QHNQLTIQQHSMHKLSSQAW 592
           Q  + T  Q + ++ +   W
Sbjct: 99  QDARKTAFQSTDYQRALSIW 118


>SB_26062| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1535

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
 Frame = +1

Query: 472  LQASDPLRRAQDKILVESFAPAQSAYYTAAFNAQ--ALEPSMVETYHKDLRDYKKSLKR 642
            +Q  D L + Q+K+  E+   A+  Y       +   LE  ++    KDL+  KKSL++
Sbjct: 894  IQMRDDLFKLQEKLKSENVQAARQGYREILGTKRDLKLEKRLLREQKKDLKKLKKSLRK 952


>SB_41537| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 71

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 15/39 (38%), Positives = 20/39 (51%)
 Frame = +2

Query: 476 KHQTLCAELKTKFSLRALLQHNQLTIQQHSMHKLSSQAW 592
           KH  L  +LKT F L  +L H Q TI   S+     ++W
Sbjct: 18  KHGILHEDLKTGFMLYDVLAHGQNTILPSSLWIHERESW 56


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,253,250
Number of Sequences: 59808
Number of extensions: 357291
Number of successful extensions: 781
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 750
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 779
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1781448916
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)