Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0615
         (673 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC26H8.14c |cox17||metallochaperone Cox17|Schizosaccharomyces ...    71   2e-13
SPBC887.02 |||ClC chloride channel|Schizosaccharomyces pombe|chr...    29   0.81 
SPAP7G5.04c |lys1||aminoadipate-semialdehyde dehydrogenase |Schi...    26   5.7  
SPCC16A11.12c |ubp1||ubiquitin C-terminal hydrolase Ubp1|Schizos...    25   7.5  
SPBC2G2.08 |ade9||C-1-tetrahydrofolatesynthase/methylenetetrahyd...    25   7.5  

>SPBC26H8.14c |cox17||metallochaperone Cox17|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 70

 Score = 70.9 bits (166), Expect = 2e-13
 Identities = 36/73 (49%), Positives = 48/73 (65%), Gaps = 3/73 (4%)
 Frame = +3

Query: 150 MGNASAKAVEVKVLEGPAP-ENVEKPKLKPCCACPETKRARDACIIK--NGEENCGPLIE 320
           M +++  +   KV E PAP  + EKPK  PCCACPETK+ARDAC+++  NG   C  LIE
Sbjct: 1   MSSSTEPSTATKVSE-PAPIASEEKPK--PCCACPETKQARDACMLQSSNGPIECAKLIE 57

Query: 321 EHKACMRKMGFNI 359
            HK CM + G+ +
Sbjct: 58  AHKKCMAQYGYEV 70


>SPBC887.02 |||ClC chloride channel|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 667

 Score = 28.7 bits (61), Expect = 0.81
 Identities = 22/89 (24%), Positives = 39/89 (43%), Gaps = 1/89 (1%)
 Frame = -1

Query: 355 LNPIFLIQALCSSISGPQFSSPFFIMHASRALFVSGQAQQGFSLGFSTFSGAGPSKTLTS 176
           +N +F  Q  CS+++       FF    + ++FVS       S+GF+ F        +  
Sbjct: 71  VNILFDKQTCCSTLTEDYECQEFFFWRNNHSVFVSCLIYVSVSVGFA-FIATTLGYVVAP 129

Query: 175 TALALAFPIFQEVFSHMMQFNL-LFFSLK 92
            A A   P  + + S     ++ +FFS+K
Sbjct: 130 AARASGIPTIKAILSGYKYPDMNVFFSIK 158


>SPAP7G5.04c |lys1||aminoadipate-semialdehyde dehydrogenase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1419

 Score = 25.8 bits (54), Expect = 5.7
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = -1

Query: 475 IINLFFFFHIGTDLLTNKQCCRRYFVANNTLIEN 374
           I +L   F +G D+LT + C R   +ANN  + N
Sbjct: 570 IPSLHHAFFVG-DILTKRDCLRLQVLANNVNVVN 602


>SPCC16A11.12c |ubp1||ubiquitin C-terminal hydrolase
           Ubp1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 849

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -3

Query: 299 LFSIFYNACIACSFCFRASTARL*FRFL 216
           LF   Y + + CS C++ STA   F +L
Sbjct: 431 LFQGMYKSTLECSICYQKSTAFDPFMYL 458


>SPBC2G2.08 |ade9||C-1-
           tetrahydrofolatesynthase/methylenetetrahydrofolatedehydr
           ogenase/methylenetetrahydrofolatecyclohydrolase/formylte
           trahydrofolatesynthetase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 969

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 15/46 (32%), Positives = 23/46 (50%)
 Frame = +3

Query: 222 PKLKPCCACPETKRARDACIIKNGEENCGPLIEEHKACMRKMGFNI 359
           PKLKP    PE     +  ++KNG   C  +++  + C +   FNI
Sbjct: 744 PKLKPGAPIPEEYLVENLDLVKNG---CSNMVKHIQNCHK---FNI 783


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,469,368
Number of Sequences: 5004
Number of extensions: 46153
Number of successful extensions: 130
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 129
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 307866294
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)