Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0614
         (642 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF452568-1|AAL57830.1|  243|Tribolium castaneum homeodomain tran...    22   4.9  
AF321227-5|AAK16425.1|  292|Tribolium castaneum Zen2 protein.          22   4.9  
U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.     21   8.6  
U81038-1|AAB39355.1|  412|Tribolium castaneum transcription fact...    21   8.6  
AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.           21   8.6  
AF243042-1|AAF68438.1|  126|Tribolium castaneum mutant transcrip...    21   8.6  

>AF452568-1|AAL57830.1|  243|Tribolium castaneum homeodomain
           transcription factor Zen2 protein.
          Length = 243

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 11/49 (22%), Positives = 21/49 (42%)
 Frame = -2

Query: 350 LSPVACSEFNTTCDVGCQTQFVVMSGHKYPVFRHYQIRFDVISSHGYTE 204
           +SP + S  N+     CQ  +    G    V +    ++D  SS+ + +
Sbjct: 160 MSPQSTSSNNSASPKACQFLYNQFPGSSQVVVKDETCQYDTESSYQFND 208


>AF321227-5|AAK16425.1|  292|Tribolium castaneum Zen2 protein.
          Length = 292

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 11/49 (22%), Positives = 21/49 (42%)
 Frame = -2

Query: 350 LSPVACSEFNTTCDVGCQTQFVVMSGHKYPVFRHYQIRFDVISSHGYTE 204
           +SP + S  N+     CQ  +    G    V +    ++D  SS+ + +
Sbjct: 180 MSPQSTSSNNSASPKACQFLYNQFPGSSQVVVKDETCQYDTESSYQFND 228


>U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.
          Length = 283

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = +2

Query: 446 QSWQRTYGWHLHDSYVS 496
           Q  Q  YG+H H +Y S
Sbjct: 56  QQQQLQYGYHNHQNYNS 72


>U81038-1|AAB39355.1|  412|Tribolium castaneum transcription factor
           Deformed protein.
          Length = 412

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = +2

Query: 446 QSWQRTYGWHLHDSYVS 496
           Q  Q  YG+H H +Y S
Sbjct: 56  QQQQLQYGYHNHQNYNS 72


>AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.
          Length = 412

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = +2

Query: 446 QSWQRTYGWHLHDSYVS 496
           Q  Q  YG+H H +Y S
Sbjct: 56  QQQQLQYGYHNHQNYNS 72


>AF243042-1|AAF68438.1|  126|Tribolium castaneum mutant
           transcription factor TcDfd1 protein.
          Length = 126

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = +2

Query: 446 QSWQRTYGWHLHDSYVS 496
           Q  Q  YG+H H +Y S
Sbjct: 56  QQQQLQYGYHNHQNYNS 72


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 158,390
Number of Sequences: 336
Number of extensions: 3642
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 16448590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)