Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0614
(642 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4D7.02c |||glycerophosphoryl diester phosphodiesterase |Schi... 42 8e-05
SPAPB1E7.05 |gde1||glycerophosphoryl diester phosphodiesterase G... 37 0.003
SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit Smc6|Schizosac... 27 1.7
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 26 5.3
SPAC17A2.06c |vps8||WD repeat protein Vps8|Schizosaccharomyces p... 25 7.0
SPCC757.04 |||transcription factor |Schizosaccharomyces pombe|ch... 25 7.0
SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||... 25 7.0
SPCC24B10.19c |||sequence orphan|Schizosaccharomyces pombe|chr 3... 25 7.0
SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces pom... 25 9.3
SPBC18E5.10 |||iron sulfur cluster assembly protein |Schizosacch... 25 9.3
>SPAC4D7.02c |||glycerophosphoryl diester phosphodiesterase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 319
Score = 41.9 bits (94), Expect = 8e-05
Identities = 24/61 (39%), Positives = 36/61 (59%), Gaps = 8/61 (13%)
Frame = +3
Query: 138 PLIIAHRGAS-GYV-------PEHTLGSYALSITMGADYIEPDLVMTKDGVLVARHDNEL 293
PL+IAHRG YV PE+T+ ++ ++ GAD +E D+ +TKD V+ HD L
Sbjct: 32 PLVIAHRGKCLTYVYRYKAKYPENTILAFQQAVKAGADCVETDVRLTKDEVVCILHDRNL 91
Query: 294 S 296
+
Sbjct: 92 N 92
>SPAPB1E7.05 |gde1||glycerophosphoryl diester phosphodiesterase
Gde1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1076
Score = 36.7 bits (81), Expect = 0.003
Identities = 22/55 (40%), Positives = 29/55 (52%), Gaps = 8/55 (14%)
Frame = +3
Query: 144 IIAHRGASGYVP--------EHTLGSYALSITMGADYIEPDLVMTKDGVLVARHD 284
+I HRG P E+TL S+ + +GA Y+E D+ MTKD V V HD
Sbjct: 749 VIGHRGLGKNQPDRLSLQLGENTLQSFIKAADLGASYVELDVQMTKDMVPVVYHD 803
>SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit
Smc6|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1140
Score = 27.5 bits (58), Expect = 1.7
Identities = 15/45 (33%), Positives = 25/45 (55%)
Frame = +3
Query: 387 EDFTLAEIKTLRARERIPDIRAGNARMDGTFTIPTFQEIISLAKG 521
++F AE+K A+E + I + +DG I + +E+I AKG
Sbjct: 343 KEFQHAEVKLSEAKENLESIVTNQSDIDG--KISSKEEVIGRAKG 385
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 25.8 bits (54), Expect = 5.3
Identities = 20/58 (34%), Positives = 27/58 (46%)
Frame = -3
Query: 406 SASVKSSVNQPVIADPSTV*VRLRVANSIRLATSVVKLSSLSCRATSTPSFVITRSGS 233
+ASV S V A ST V +++I A S LSS + +ST + T S S
Sbjct: 1084 TASVTGSPTSSVTAVSSTSSVEGTASSTIAAAASAATLSSDAASGSSTVTSSATASSS 1141
>SPAC17A2.06c |vps8||WD repeat protein Vps8|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1272
Score = 25.4 bits (53), Expect = 7.0
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +3
Query: 27 IFGLLVLSFSTVGITFGIPVNENLDF 104
I LL + FS V + F +PV+ ++DF
Sbjct: 711 IHTLLKVIFSVVPLPFDVPVDNSVDF 736
>SPCC757.04 |||transcription factor |Schizosaccharomyces pombe|chr
3|||Manual
Length = 684
Score = 25.4 bits (53), Expect = 7.0
Identities = 10/24 (41%), Positives = 13/24 (54%)
Frame = -2
Query: 323 NTTCDVGCQTQFVVMSGHKYPVFR 252
+T CDV + FVV +YP R
Sbjct: 53 DTVCDVSSNSTFVVKCNRQYPCTR 76
>SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1367
Score = 25.4 bits (53), Expect = 7.0
Identities = 15/47 (31%), Positives = 24/47 (51%)
Frame = -2
Query: 584 KMCAMFYFWINSNSSFLTFLQTFRQTNDFLKRRNREGAIHTCVASSD 444
++CA +S+SSF T ++ Q ND L + G + T V+ D
Sbjct: 1319 RLCAKSDDETSSSSSFATDIEMCEQCNDPLSSKKNSGIV-TSVSFDD 1364
>SPCC24B10.19c |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 455
Score = 25.4 bits (53), Expect = 7.0
Identities = 18/54 (33%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
Frame = +2
Query: 410 KNVTS*RTHTRYQSWQRTYGWHLHDSYVSR-NH*SGERSAKKSKKNYWNLSRNK 568
K V R T +WQ+ W + + +S SG K+K NLSRNK
Sbjct: 400 KRVKIKRIRTLLDTWQQE--WRILNKAISNAESNSGRGQNSKTKTTSVNLSRNK 451
>SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1375
Score = 25.0 bits (52), Expect = 9.3
Identities = 17/39 (43%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
Frame = -1
Query: 321 YDLRRRLSNSVRCHVGPQVPRLSS--LPDQVRCNQLPWL 211
YD R+L+ S+R + PRLSS LP Q+R L W+
Sbjct: 193 YDCARKLAKSLRFANVSRDPRLSSELLPFQMRV--LEWM 229
>SPBC18E5.10 |||iron sulfur cluster assembly protein
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 452
Score = 25.0 bits (52), Expect = 9.3
Identities = 17/44 (38%), Positives = 23/44 (52%)
Frame = +3
Query: 360 GSAITGWFTEDFTLAEIKTLRARERIPDIRAGNARMDGTFTIPT 491
GS ITG E+ L I++L+ +PDI N G F +PT
Sbjct: 200 GSYITG---EESAL--IQSLQGEFPVPDIPINNTITSGLFGLPT 238
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,802,295
Number of Sequences: 5004
Number of extensions: 59750
Number of successful extensions: 211
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 203
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 210
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 287744314
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -