Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0614
(642 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_39639| Best HMM Match : No HMM Matches (HMM E-Value=.) 40 0.002
SB_19421| Best HMM Match : Ribosomal_L36 (HMM E-Value=0.85) 31 0.80
SB_2635| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.1
SB_36509| Best HMM Match : GDPD (HMM E-Value=5.9e-17) 29 2.4
SB_49574| Best HMM Match : IncA (HMM E-Value=2) 29 3.2
SB_44238| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.2
SB_17438| Best HMM Match : Alpha_L_fucos (HMM E-Value=1.1e-28) 29 4.2
SB_41020| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.6
SB_25763| Best HMM Match : MgtE_N (HMM E-Value=1.9) 28 5.6
SB_30815| Best HMM Match : Sas10_Utp3 (HMM E-Value=1) 28 7.4
SB_21215| Best HMM Match : DUF1279 (HMM E-Value=0.54) 28 7.4
SB_37973| Best HMM Match : ABC_tran (HMM E-Value=0) 28 7.4
SB_29183| Best HMM Match : DUF1279 (HMM E-Value=0.89) 28 7.4
SB_48289| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.8
>SB_39639| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 154
Score = 39.5 bits (88), Expect = 0.002
Identities = 20/50 (40%), Positives = 27/50 (54%)
Frame = +3
Query: 138 PLIIAHRGASGYVPEHTLGSYALSITMGADYIEPDLVMTKDGVLVARHDN 287
PL+I HRG E+TL + + AD E D+ +TKD LV HD+
Sbjct: 46 PLVIGHRGNPVRYQENTLEGFTSLLGTNADGFELDIYLTKDEELVCFHDD 95
>SB_19421| Best HMM Match : Ribosomal_L36 (HMM E-Value=0.85)
Length = 647
Score = 31.1 bits (67), Expect = 0.80
Identities = 26/81 (32%), Positives = 41/81 (50%), Gaps = 3/81 (3%)
Frame = +3
Query: 180 EHTLGSYALSI-TMGADYIEPDLVMTKDGVLVARHDNELSLTTDVASRIEFATRNRTQTV 356
E TLG+ LS T ++PD +TK G++ HD L+ S IE + N+T +
Sbjct: 183 ESTLGAKKLSSDTTSISALKPDAGITKTGIVPPGHDTVLN-----GSEIELSELNKTAVI 237
Query: 357 DGSAITGW-FTE-DFTLAEIK 413
+ + + FT+ TL+ IK
Sbjct: 238 NHTTPRAFQFTDVSQTLSAIK 258
>SB_2635| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1390
Score = 30.7 bits (66), Expect = 1.1
Identities = 21/73 (28%), Positives = 38/73 (52%), Gaps = 3/73 (4%)
Frame = +3
Query: 384 TEDFTLAE-IKTLRARERIPDIRAGNARMDGTFTIPTFQEIISLAKGLQKSQ--KRTIGI 554
++ FT+ + IK A + I DI+ G + +P ++++ + KG+ KSQ K G+
Sbjct: 641 SDSFTVKDQIKKSYAVKCIEDIKKG------VWIVPAIRQLLKITKGMSKSQYNKHDKGV 694
Query: 555 YPEIKHSTHFKKL 593
PE+ + KL
Sbjct: 695 LPELNKTYDIIKL 707
>SB_36509| Best HMM Match : GDPD (HMM E-Value=5.9e-17)
Length = 534
Score = 29.5 bits (63), Expect = 2.4
Identities = 11/40 (27%), Positives = 26/40 (65%)
Frame = +3
Query: 201 ALSITMGADYIEPDLVMTKDGVLVARHDNELSLTTDVASR 320
++ ++ G ++E D+ +TKD V V HD+ + L+ + +++
Sbjct: 254 SIRLSQGVHFVEFDVHVTKDHVPVVFHDDTVKLSVETSNQ 293
>SB_49574| Best HMM Match : IncA (HMM E-Value=2)
Length = 254
Score = 29.1 bits (62), Expect = 3.2
Identities = 26/85 (30%), Positives = 35/85 (41%), Gaps = 5/85 (5%)
Frame = +3
Query: 282 DNELSLTTDVASRIE----FATRNRTQTV-DGSAITGWFTEDFTLAEIKTLRARERIPDI 446
D E T +SR+ ATR+ TQT SA T + TE + L RE PD+
Sbjct: 36 DGESIPMTSTSSRMHAAHGMATRSATQTAGTASAETSFITEG-AATRLGLLFLREEYPDL 94
Query: 447 RAGNARMDGTFTIPTFQEIISLAKG 521
R + T ++ L KG
Sbjct: 95 NENLIRFQSDWRGRTLIQVRDLGKG 119
>SB_44238| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 204
Score = 28.7 bits (61), Expect = 4.2
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +2
Query: 140 TNHCPPRSQRICPRTHPRFLCSQYNH 217
T C S++I P HP +LC+Q +H
Sbjct: 162 TAFCSGESEKIDPPIHPVYLCTQGSH 187
>SB_17438| Best HMM Match : Alpha_L_fucos (HMM E-Value=1.1e-28)
Length = 261
Score = 28.7 bits (61), Expect = 4.2
Identities = 13/33 (39%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Frame = +1
Query: 418 YELENAYQISELATHV-WMAPSRFLRFKKSLVW 513
Y+L N Y+ S L T W+AP+ + R ++ L W
Sbjct: 8 YDLINTYEPSYLWTDGDWVAPNEYFRSREFLAW 40
>SB_41020| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1229
Score = 28.3 bits (60), Expect = 5.6
Identities = 20/61 (32%), Positives = 35/61 (57%), Gaps = 3/61 (4%)
Frame = -3
Query: 454 PALISGMRSLARNVFISASVKSSVNQPVIAD---PSTV*VRLRVANSIRLATSVVKLSSL 284
P+ ++ M +L +V ++ S+ S+ P I+ P V + N+ R+ATSV+ LSSL
Sbjct: 731 PSYVANMTTLDSSVSLTRSLLSTTLIPSISTSILPYNTTV-IATPNTTRIATSVILLSSL 789
Query: 283 S 281
+
Sbjct: 790 N 790
>SB_25763| Best HMM Match : MgtE_N (HMM E-Value=1.9)
Length = 483
Score = 28.3 bits (60), Expect = 5.6
Identities = 15/47 (31%), Positives = 21/47 (44%), Gaps = 1/47 (2%)
Frame = +2
Query: 443 YQSWQRTYGWHLHDSYVSRNH*SGERSAKKSKKNYWNLSRN-KT*HT 580
Y +W W HD++ + N+ S + S N WN N T HT
Sbjct: 403 YDNWSTHNNWSTHDNWSNHNNWSAHNN--WSAHNNWNTYHNWSTYHT 447
>SB_30815| Best HMM Match : Sas10_Utp3 (HMM E-Value=1)
Length = 864
Score = 27.9 bits (59), Expect = 7.4
Identities = 21/65 (32%), Positives = 27/65 (41%), Gaps = 1/65 (1%)
Frame = +3
Query: 330 ATRNRTQTV-DGSAITGWFTEDFTLAEIKTLRARERIPDIRAGNARMDGTFTIPTFQEII 506
ATRN TQT SA T + TE + RE PD+ R T ++
Sbjct: 2 ATRNATQTAGTASAETSFITEG-AATRLGLQSLREEYPDLHENLLRFQSDRRGKTLIQVR 60
Query: 507 SLAKG 521
+L KG
Sbjct: 61 NLGKG 65
>SB_21215| Best HMM Match : DUF1279 (HMM E-Value=0.54)
Length = 756
Score = 27.9 bits (59), Expect = 7.4
Identities = 21/65 (32%), Positives = 27/65 (41%), Gaps = 1/65 (1%)
Frame = +3
Query: 330 ATRNRTQTV-DGSAITGWFTEDFTLAEIKTLRARERIPDIRAGNARMDGTFTIPTFQEII 506
ATRN TQT SA T + TE + RE PD+ R T ++
Sbjct: 56 ATRNATQTAGTASAETSFITEG-AATRLGLQSLREEYPDLHENLLRFQSDRRGKTLIQVR 114
Query: 507 SLAKG 521
+L KG
Sbjct: 115 NLGKG 119
>SB_37973| Best HMM Match : ABC_tran (HMM E-Value=0)
Length = 3369
Score = 27.9 bits (59), Expect = 7.4
Identities = 22/73 (30%), Positives = 35/73 (47%), Gaps = 2/73 (2%)
Frame = +3
Query: 273 ARHDNELSLTTD-VASRIEFAT-RNRTQTVDGSAITGWFTEDFTLAEIKTLRARERIPDI 446
AR N +L+TD V +++ FA RNR+ T A + + T+ ++ DI
Sbjct: 667 ARLLNLKNLSTDGVNTKVFFADFRNRSNTAQAQATLQRTRDHLATVKADTVDVTNKVYDI 726
Query: 447 RAGNARMDGTFTI 485
R NA +DG +
Sbjct: 727 RTKNA-LDGIHVV 738
>SB_29183| Best HMM Match : DUF1279 (HMM E-Value=0.89)
Length = 253
Score = 27.9 bits (59), Expect = 7.4
Identities = 21/65 (32%), Positives = 29/65 (44%), Gaps = 1/65 (1%)
Frame = +3
Query: 330 ATRNRTQTV-DGSAITGWFTEDFTLAEIKTLRARERIPDIRAGNARMDGTFTIPTFQEII 506
ATR+ TQT SA T + TE A++ RE PD+ R T ++
Sbjct: 2 ATRSATQTAGTASAETSFITEG-AAAKLGLQSLREEYPDLNENLIRFQSDRRGKTLIQVR 60
Query: 507 SLAKG 521
+L KG
Sbjct: 61 NLGKG 65
>SB_48289| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 311
Score = 27.5 bits (58), Expect = 9.8
Identities = 23/84 (27%), Positives = 35/84 (41%), Gaps = 4/84 (4%)
Frame = +3
Query: 282 DNELSLTTDVASRIE----FATRNRTQTVDGSAITGWFTEDFTLAEIKTLRARERIPDIR 449
D E T +SR+ ATR+ TQT D ++ FT + + RE+ PD+
Sbjct: 36 DGEPIPMTSTSSRMHAAHSMATRSATQTTDETS----FTTEGAATRLGLQSLREKYPDLN 91
Query: 450 AGNARMDGTFTIPTFQEIISLAKG 521
R T ++ +L KG
Sbjct: 92 ENLLRFQSDRRGKTLIQVRNLGKG 115
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,773,576
Number of Sequences: 59808
Number of extensions: 450206
Number of successful extensions: 1247
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1082
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1246
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1620947750
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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