Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0614
         (642 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    24   1.1  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    24   1.1  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   4.4  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    22   5.8  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    22   5.8  

>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 12/36 (33%), Positives = 17/36 (47%)
 Frame = +3

Query: 393 FTLAEIKTLRARERIPDIRAGNARMDGTFTIPTFQE 500
           + + EIK  RA   +PD        DGT  I + Q+
Sbjct: 545 YPIEEIKWERANRELPDDLRQKVLPDGTLVITSVQK 580


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 12/36 (33%), Positives = 17/36 (47%)
 Frame = +3

Query: 393 FTLAEIKTLRARERIPDIRAGNARMDGTFTIPTFQE 500
           + + EIK  RA   +PD        DGT  I + Q+
Sbjct: 545 YPIEEIKWERANRELPDDLRQKVLPDGTLVITSVQK 580


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 16/62 (25%), Positives = 26/62 (41%), Gaps = 2/62 (3%)
 Frame = -2

Query: 497 LKRRNREGAIHTCVAS--SDIWYAFSSS*RFYFGQCKIFREPTGDSRSVHCLSPVACSEF 324
           LK R R   +H   +S  +  W   +S    +   CK+ R P G  + +  L  +    F
Sbjct: 67  LKLRIRCSDVHHFESSFNAQSWQRLTSLHELHVHGCKVLRIPEGAFQPLLELKKLTVQTF 126

Query: 323 NT 318
           N+
Sbjct: 127 NS 128


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 9/16 (56%), Positives = 9/16 (56%)
 Frame = -1

Query: 639 RFYGVCSQQAPPLPDL 592
           RF G C    PPLP L
Sbjct: 429 RFGGSCLIHGPPLPPL 444


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 9/16 (56%), Positives = 9/16 (56%)
 Frame = -1

Query: 639 RFYGVCSQQAPPLPDL 592
           RF G C    PPLP L
Sbjct: 429 RFGGSCLIHGPPLPPL 444


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 185,635
Number of Sequences: 438
Number of extensions: 4355
Number of successful extensions: 19
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19315974
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)