Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0613
(687 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 306 2e-84
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 148 6e-37
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 139 3e-34
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 121 9e-29
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 94 2e-20
SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po... 78 1e-15
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 74 2e-14
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 71 2e-13
SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces pomb... 43 4e-05
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa... 28 1.5
SPAC16.04 |dus3||tRNA dihydrouridine synthase Dus3 |Schizosaccha... 27 2.5
SPBC2D10.03c |||DUF866 domain protein|Schizosaccharomyces pombe|... 25 7.8
SPBC16A3.08c |||nuclear telomere cap complex subunit |Schizosacc... 25 7.8
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 306 bits (751), Expect = 2e-84
Identities = 141/161 (87%), Positives = 151/161 (93%)
Frame = +1
Query: 1 KLCYVALDFEQEMATAAASTSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMESCGI 180
KLCYVALDFEQE+ TAA S+SLEKSYELPDGQVITIGNERFR PEALFQPS LG+E+ GI
Sbjct: 215 KLCYVALDFEQELQTAAQSSSLEKSYELPDGQVITIGNERFRAPEALFQPSALGLENAGI 274
Query: 181 HETVYNSIMKCDVDIRKDLYANTVMSGGTTMYPGIADRMQKEITALAPSTIKIKIIAPPE 360
HE YNSIMKCDVDIRKDLY N VMSGGTTMYPGIADRMQKEI ALAPS++K+KI+APPE
Sbjct: 275 HEATYNSIMKCDVDIRKDLYGNVVMSGGTTMYPGIADRMQKEIQALAPSSMKVKIVAPPE 334
Query: 361 RKYSVWIGGSILASLSTFQQMWISKEEYDESGPGIVHRKCF 483
RKYSVWIGGSILASLSTFQQMWISK+EYDESGPGIV+RKCF
Sbjct: 335 RKYSVWIGGSILASLSTFQQMWISKQEYDESGPGIVYRKCF 375
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 148 bits (359), Expect = 6e-37
Identities = 68/161 (42%), Positives = 103/161 (63%)
Frame = +1
Query: 1 KLCYVALDFEQEMATAAASTSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMESCGI 180
K CYVA DF E+ + +Y+LPD Q IT+G E F PE LF P +G E+ G+
Sbjct: 220 KCCYVASDFRSEIESWTEHKPQIHTYQLPDNQTITLGTECFSAPEVLFNPEMMGSEASGL 279
Query: 181 HETVYNSIMKCDVDIRKDLYANTVMSGGTTMYPGIADRMQKEITALAPSTIKIKIIAPPE 360
H ++ SI+ D+D+R LY+N V+SGG+T+ G +R E+ A++ ++KI A PE
Sbjct: 280 HIQLFKSILLSDIDLRSTLYSNIVLSGGSTLLRGFGERFISELRAISGKKNQVKIYASPE 339
Query: 361 RKYSVWIGGSILASLSTFQQMWISKEEYDESGPGIVHRKCF 483
R ++ W+GGSILASLSTF+++ I+ EEY ++ ++ R+ F
Sbjct: 340 RMHNAWLGGSILASLSTFRRLLITSEEY-KNDQNVIFRRRF 379
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 139 bits (337), Expect = 3e-34
Identities = 70/164 (42%), Positives = 106/164 (64%), Gaps = 12/164 (7%)
Frame = +1
Query: 1 KLCYVALDFEQEMATAAASTSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMESCGI 180
KLCYV+ D E + + +T L ++Y LPDG+VI +G+ER+ CPE LFQP +G E G+
Sbjct: 215 KLCYVSYDLELDHKLSEETTVLMRNYTLPDGRVIKVGSERYECPECLFQPHLVGSEQPGL 274
Query: 181 HETVYNSIMKCDVDIRKDLYANTVMSGGTTMYPGIADRMQKEITAL--------APSTI- 333
E ++++I DVDIRK LY V+SGG++MY G+ R++KEI L P+ +
Sbjct: 275 SEFIFDTIQAADVDIRKYLYRAIVLSGGSSMYAGLPSRLEKEIKQLWFERVLHGDPARLP 334
Query: 334 --KIKIIAPPERKYSVWIGGSILAS-LSTFQQMWISKEEYDESG 456
K+KI P R+++V+IGG++LA ++ MW+SK E++E G
Sbjct: 335 NFKVKIEDAPRRRHAVFIGGAVLADIMAQNDHMWVSKAEWEEYG 378
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 121 bits (292), Expect = 9e-29
Identities = 65/148 (43%), Positives = 85/148 (57%), Gaps = 11/148 (7%)
Frame = +1
Query: 46 AAASTSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMESC---------GIHETVYN 198
A AS+ K +E PDG G ERFR E LF PSF S G+HE VY
Sbjct: 271 AKASSRNPKPFEFPDGVTHKFGQERFRISEILFNPSFSASRSAETTPPQGSVGLHELVYQ 330
Query: 199 SIMKCDVDIRKDLYANTVMSGGTTMYPGIADRMQKEITALAP-STIKIKII-APPERKYS 372
SI+ CD ++R L N V++GGT++ PG+++R+Q E+ LA S I + +
Sbjct: 331 SILACDSELRSPLLNNIVVTGGTSLIPGLSERLQAEVQRLATGSRINVHTAETASATSNA 390
Query: 373 VWIGGSILASLSTFQQMWISKEEYDESG 456
VW GGSILASL FQ +W+SK+EYDE G
Sbjct: 391 VWFGGSILASLDNFQHLWVSKQEYDEVG 418
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 93.9 bits (223), Expect = 2e-20
Identities = 46/108 (42%), Positives = 70/108 (64%), Gaps = 6/108 (5%)
Frame = +1
Query: 175 GIHETVYNSIMKCDVDIRKDLYANTVMSGGTTMYPGIADRMQKEITALAPSTIKIKIIAP 354
GI + N I +CDVDIR L N ++ GGT++ G + R+Q E++ L P + ++KI A
Sbjct: 326 GIPQLFQNCISECDVDIRASLLNNVIVCGGTSLMQGFSLRLQNELSKLYPGS-RLKIHAS 384
Query: 355 P---ERKYSVWIGGSILASLSTFQQMWISKEEYDESGP---GIVHRKC 480
ER Y+ W+GGSIL+SL TF Q+WIS++EY+E G ++ ++C
Sbjct: 385 GHVVERSYASWLGGSILSSLGTFHQLWISRQEYEEHGSDRLALIEKRC 432
>SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 401
Score = 78.2 bits (184), Expect = 1e-15
Identities = 54/178 (30%), Positives = 82/178 (46%), Gaps = 20/178 (11%)
Frame = +1
Query: 4 LCYVALDFEQEMATAAAS--TSLEKSYELPD------------------GQVITIGNERF 123
+CYV+ +F+++M + LE Y LPD QV+ + NERF
Sbjct: 222 VCYVSQNFKEDMEICHEKPRSKLEICYALPDYSTGKHGYIVRDINQKIEQQVLNLSNERF 281
Query: 124 RCPEALFQPSFLGMESCGIHETVYNSIMKCDVDIRKDLYANTVMSGGTTMYPGIADRMQK 303
PE LF PS + + GI E V S+ +I+ L N V GG +PG R+
Sbjct: 282 MIPELLFSPSDIEIREAGIPEAVMQSVTHFPENIQAMLLENVVTIGGNCKFPGFHKRLSS 341
Query: 304 EITALAPSTIKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKEEYDESGPGIVHRK 477
E+ +LAP+ ++K+ P + W S + L + I++ EY E G I+ RK
Sbjct: 342 ELRSLAPANWEVKVFEPSDPICFPWKKASHM-PLEHWNANKITRSEYSEHGANIMTRK 398
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 73.7 bits (173), Expect = 2e-14
Identities = 50/175 (28%), Positives = 79/175 (45%), Gaps = 19/175 (10%)
Frame = +1
Query: 7 CYVALDFEQEMATAAASTS--LEKSYELPDGQVITI--GNERFRCPEALFQPSFLGMESC 174
CYV D +E + L+ + E G TI G ERF PE F P +
Sbjct: 245 CYVCPDIVKEFSRFDREPDRYLKYASESITGHSTTIDVGFERFLAPEIFFNPEIASSDFL 304
Query: 175 G-IHETVYNSIMKCDVDIRKDLYANTVMSGGTTMYPGIADRMQKEITALAPSTI------ 333
+ E V N + +D+RK LY N V+SGG+T++ +R+Q+++ + I
Sbjct: 305 TPLPELVDNVVQSSPIDVRKGLYKNIVLSGGSTLFKNFGNRLQRDLKRIVDERIHRSEML 364
Query: 334 --------KIKIIAPPERKYSVWIGGSILASLSTFQQMWISKEEYDESGPGIVHR 474
+ +I+ ++ +VW GGS+LA F +K +Y+E G I R
Sbjct: 365 SGAKSGGVDVNVISHKRQRNAVWFGGSLLAQTPEFGSYCHTKADYEEYGASIARR 419
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 70.9 bits (166), Expect = 2e-13
Identities = 32/115 (27%), Positives = 62/115 (53%)
Frame = +1
Query: 115 ERFRCPEALFQPSFLGMESCGIHETVYNSIMKCDVDIRKDLYANTVMSGGTTMYPGIADR 294
E+ R PE +F PS +G++ GI E + + + + ++ ++ L +N +++GG PG+ R
Sbjct: 594 EQIRVPEVIFSPSIVGIDQAGILEIMRSILQRHSLEEQQKLVSNVLITGGLGSLPGMETR 653
Query: 295 MQKEITALAPSTIKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKEEYDESGP 459
+++E+T++ P I + W G S + F+ +++EEY E GP
Sbjct: 654 IKRELTSIMPVGSSINVFRASNPLLDAWKGASEWSVTEKFKAAKVTREEYLEKGP 708
>SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 43.2 bits (97), Expect = 4e-05
Identities = 20/86 (23%), Positives = 42/86 (48%), Gaps = 3/86 (3%)
Frame = +1
Query: 229 KDLYANTVMSGGTTMYPGIADRMQKEITALAPSTIKIKIIAPP---ERKYSVWIGGSILA 399
K+LY++ ++ GG +PG A +++ I + + I +I PP + ++ W G I
Sbjct: 527 KNLYSSILIVGGAGQFPGFAHLLEERIHSKRANIPTISVIPPPRSMDAQFVAWKGACIYN 586
Query: 400 SLSTFQQMWISKEEYDESGPGIVHRK 477
+ ++WI ++ G ++ K
Sbjct: 587 RIRIVSELWIKNSDWKMLGSRVLQYK 612
>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
Arp9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 523
Score = 27.9 bits (59), Expect = 1.5
Identities = 13/37 (35%), Positives = 23/37 (62%), Gaps = 3/37 (8%)
Frame = +1
Query: 376 WIGGSILASLSTFQQM---WISKEEYDESGPGIVHRK 477
++GGSI+A S + + +++ EEY + GP +H K
Sbjct: 486 FLGGSIVAKTSFNESVSSHYVTLEEYAQHGPTAIHTK 522
>SPAC16.04 |dus3||tRNA dihydrouridine synthase Dus3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 617
Score = 27.1 bits (57), Expect = 2.5
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = +1
Query: 301 KEITALAPSTIKIKIIAPPERKYSVWIGGSILASLST 411
KEI++ A S I + + P E+ W ILA L+T
Sbjct: 212 KEISSQARSNIALPTLRPQEKNLIDWRDRKILAPLTT 248
>SPBC2D10.03c |||DUF866 domain protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 157
Score = 25.4 bits (53), Expect = 7.8
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = -2
Query: 539 ELGRAQHHTAPGSRGRAA*KHLRWT 465
E+ R++ H+ PGS+G A +L WT
Sbjct: 46 EISRSETHSIPGSKGEA---NLIWT 67
>SPBC16A3.08c |||nuclear telomere cap complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 284
Score = 25.4 bits (53), Expect = 7.8
Identities = 15/43 (34%), Positives = 20/43 (46%)
Frame = +3
Query: 180 PRDRVQLHHEVRRRHP*GPVRQHRHVRWYHHVPRYRRQDAEGD 308
PR+ V R+R P P + R V PR RRQ +G+
Sbjct: 41 PRELVAQSTTSRKRDPNQPTPRERTVNKKADQPRRRRQAPQGN 83
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,353,855
Number of Sequences: 5004
Number of extensions: 45619
Number of successful extensions: 141
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 134
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 317927284
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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