Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0612
(717 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 32 0.094
SPAC1039.02 |||phosphoprotein phosphatase |Schizosaccharomyces p... 28 1.5
SPAC23A1.06c |cmk2|mkp2|MAPK-activated protein kinase Cmk2|Schiz... 27 2.7
SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 26 4.7
SPAP27G11.15 |slx1||structure-specific endonuclease catalytic su... 26 4.7
SPAC19G12.15c |tpp1||trehalose-6-phosphate phosphatase Tpp1|Schi... 26 6.2
SPCC777.08c |||HbrB family protein|Schizosaccharomyces pombe|chr... 26 6.2
SPAC630.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 25 8.2
SPAC16E8.02 |||DUF962 family protein|Schizosaccharomyces pombe|c... 25 8.2
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 31.9 bits (69), Expect = 0.094
Identities = 38/146 (26%), Positives = 69/146 (47%)
Frame = -2
Query: 683 VLSLLT*KSRSLVSRSSNLELHAPLK*MALTRTAAVAELSESGLTKSLMRLLVFSSTQSL 504
V S+L+ + S S S ++ + + T++ + +S S + S + ST SL
Sbjct: 576 VSSILSSSTSSPSSTSLSISSSSTSSTFSSASTSSPSSISSSISSSSTILSSPTPSTSSL 635
Query: 503 IDLAATVFFEKSMFWTSELKTSWXTTAKXXXXXXXX*TYTLFAILSSTPLIDRRSRLLLA 324
+ ++++ S +S + T +++ TY+ I SS+ L+ S L+++
Sbjct: 636 MISSSSIISGSSSILSSSISTIPISSS--------LSTYSSSVIPSSSTLVSSSSSLIVS 687
Query: 323 NSVRIASSSGKPIAFKSSSWVSPSEA 246
+S +ASSS PI SSS VS A
Sbjct: 688 SS-PVASSSSSPIP-SSSSLVSTYSA 711
>SPAC1039.02 |||phosphoprotein phosphatase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 601
Score = 27.9 bits (59), Expect = 1.5
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = +1
Query: 322 FASKSRDLRSIKGVELKMANKVYVHDGGKLDE 417
FA + ++L KGV+L M + +HDG L +
Sbjct: 79 FALRMKELADFKGVDLLMVDTGDLHDGNGLSD 110
>SPAC23A1.06c |cmk2|mkp2|MAPK-activated protein kinase
Cmk2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 504
Score = 27.1 bits (57), Expect = 2.7
Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Frame = -2
Query: 215 ENAERTTLFXWII-FHYFGKHSGCEVIVSIFEHIREICDGCHCRDGDSKQTN 63
E AE LF I+ F YF ++ +I+ + E ++ + D C D K N
Sbjct: 142 ELAEGGELFHQIVNFTYFSENLARHIIIQVAEAVKHLHDVCGIVHRDIKPEN 193
>SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 536
Score = 26.2 bits (55), Expect = 4.7
Identities = 18/71 (25%), Positives = 31/71 (43%)
Frame = -2
Query: 458 TSELKTSWXTTAKXXXXXXXX*TYTLFAILSSTPLIDRRSRLLLANSVRIASSSGKPIAF 279
TS + TS ++A ++ SS+ + S +L ++S SSS
Sbjct: 7 TSSVDTSLSSSASSSIPASSSSAAASTSLSSSSVIPSSSSSMLSSSSATAISSSSSSSPL 66
Query: 278 KSSSWVSPSEA 246
SSS+ SP+ +
Sbjct: 67 SSSSFTSPASS 77
>SPAP27G11.15 |slx1||structure-specific endonuclease catalytic
subunit |Schizosaccharomyces pombe|chr 1|||Manual
Length = 271
Score = 26.2 bits (55), Expect = 4.7
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = +1
Query: 592 VNAIYFKGAWSSKFDERLTSDRDFYVSKDKTI 687
V+A+ F+ W + R T D DF K KTI
Sbjct: 68 VSALKFEWNWQNLGISRYTKDCDFRSKKQKTI 99
>SPAC19G12.15c |tpp1||trehalose-6-phosphate phosphatase
Tpp1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 817
Score = 25.8 bits (54), Expect = 6.2
Identities = 12/33 (36%), Positives = 14/33 (42%)
Frame = +2
Query: 35 DAGHKHEDNHLFVYYRHRGNGSRHKSL*CAQKW 133
D K E +F YY R GS + CA W
Sbjct: 653 DMSWKKEVRRIFQYYTDRTQGSSIEEKRCAMTW 685
>SPCC777.08c |||HbrB family protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 422
Score = 25.8 bits (54), Expect = 6.2
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = +1
Query: 481 NTVAAKSINDWVEENTNNRIKDLVNPDSLS 570
+T +A SIN W+ +NT I+ + N SLS
Sbjct: 9 STSSASSIN-WIPKNTKTSIESVSNTISLS 37
>SPAC630.07c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 430
Score = 25.4 bits (53), Expect = 8.2
Identities = 9/18 (50%), Positives = 14/18 (77%)
Frame = -1
Query: 489 DCILREINVLDVRIEDVL 436
DCI ++N+LD+ ED+L
Sbjct: 108 DCIWYQLNLLDISDEDIL 125
>SPAC16E8.02 |||DUF962 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 222
Score = 25.4 bits (53), Expect = 8.2
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = -2
Query: 716 SPRLYIMGTLIVLSLLT*KSRSLVSRSS 633
SP LY+ ++ L T SRSLV+RS+
Sbjct: 79 SPVLYLFSYILPSKLFTIFSRSLVNRSA 106
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,714,366
Number of Sequences: 5004
Number of extensions: 52093
Number of successful extensions: 169
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 167
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 169
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 335201398
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -