Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0612
(717 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_38975| Best HMM Match : Serpin (HMM E-Value=0) 94 1e-19
SB_55237| Best HMM Match : Serpin (HMM E-Value=0) 83 3e-16
SB_55238| Best HMM Match : Serpin (HMM E-Value=0) 79 4e-15
SB_11238| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.93
SB_49672| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.8
SB_27683| Best HMM Match : Exo_endo_phos (HMM E-Value=1.5e-20) 29 5.0
SB_24891| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.0
SB_4415| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.0
SB_2840| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.0
SB_48263| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.0
SB_29987| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.0
SB_5257| Best HMM Match : SlyX (HMM E-Value=2.2) 28 6.6
SB_13347| Best HMM Match : PsbX (HMM E-Value=0.21) 28 8.7
>SB_38975| Best HMM Match : Serpin (HMM E-Value=0)
Length = 380
Score = 93.9 bits (223), Expect = 1e-19
Identities = 48/172 (27%), Positives = 91/172 (52%), Gaps = 1/172 (0%)
Frame = +1
Query: 205 SAFSVLPPLAQLALASDGETHEELLKAIGFPDDDAIRTEFASKSRDLRSIKGVELKMANK 384
S S++ LA L + G T ++ K FP D + ++ + + G ++ MAN+
Sbjct: 33 SPASIVVALAMTYLGARGNTATQMTKTFHFPTDVPEKFHDFLQALNASNSDGNQILMANR 92
Query: 385 VYVHDGGKLDENFAVVXQDVFNSDVQNIDFSKNTVAAK-SINDWVEENTNNRIKDLVNPD 561
++ G ++ E F ++ F++++ +D+ KN+ A+ ++N WVE+ T ++IK+L+
Sbjct: 93 LFAQMGFEILEEFKKASKESFSAEMALVDYVKNSNGARDTVNRWVEQKTKDKIKNLIPEG 152
Query: 562 SLSSATAAVLVNAIYFKGAWSSKFDERLTSDRDFYVSKDKTIKVPMMYKRGD 717
+ T LVNA+YFKG+W F+ T F + + I+V MY+ +
Sbjct: 153 MFNKDTILCLVNAVYFKGSWMKHFNRNATQSGKFKTTPSQEIQVQFMYQSSE 204
>SB_55237| Best HMM Match : Serpin (HMM E-Value=0)
Length = 363
Score = 82.6 bits (195), Expect = 3e-16
Identities = 51/168 (30%), Positives = 87/168 (51%), Gaps = 7/168 (4%)
Frame = +1
Query: 229 LAQLALASDGETHEELLKAIGFPDDDAIRTEFASKSRD---LRSIKGV-ELKMANKVYVH 396
L + L S G T ++ G+ + + T K L S G E+++ NK++ H
Sbjct: 5 LGLVYLGSRGTTAIQIANIFGWKESEFEETHRTFKQFHEALLTSDLGYGEIQLVNKIWGH 64
Query: 397 DGGKLDENFAVVXQDVFNSDVQNIDF-SKNTVAAKSINDWVEENTNNRIKDLVNPDSLSS 573
D ++ E F ++ ++S++ +DF +K A K +N WV + T IK+L+ ++S
Sbjct: 65 DEFEILEEFLHGTREFYHSEMAQVDFVNKAFDARKEVNAWVHQQTKGNIKELIPHGVINS 124
Query: 574 ATAAVLVNAIYFKGAWSSKFDERLTSDRDFYV--SKDKTIKVPMMYKR 711
T ++VNA+YFKG W +F E T F+V S + I+V MM ++
Sbjct: 125 LTRLIIVNAVYFKGVWKKEFGEENTFHAAFFVPESHESKIEVEMMTRK 172
>SB_55238| Best HMM Match : Serpin (HMM E-Value=0)
Length = 345
Score = 79.0 bits (186), Expect = 4e-15
Identities = 35/117 (29%), Positives = 63/117 (53%), Gaps = 1/117 (0%)
Frame = +1
Query: 364 ELKMANKVYVHDGGKLDENFAVVXQDVFNSDVQNIDFSKNTVAA-KSINDWVEENTNNRI 540
E+ +AN +++ + + F + Q +++D+ +D+ + A K +N WVEE T +I
Sbjct: 49 EMSIANNLFLQKDFSILKEFTDICQKYYDADISLVDYKTDFEGARKHVNQWVEERTKKKI 108
Query: 541 KDLVNPDSLSSATAAVLVNAIYFKGAWSSKFDERLTSDRDFYVSKDKTIKVPMMYKR 711
DL+ P + T LVNAIYFKG W F + + +F + ++V MM+++
Sbjct: 109 CDLIAPGVFNMLTRLTLVNAIYFKGMWDKPFKKEHSHSSEFRTTSSNEVEVEMMFQK 165
>SB_11238| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 99
Score = 31.1 bits (67), Expect = 0.93
Identities = 16/41 (39%), Positives = 22/41 (53%)
Frame = -3
Query: 256 HQKLKLTEREEAAPKMPRGQRFSXGLFFTTSVNILAVKLSF 134
HQ L + E + ++PK PR +F GLF T +L V F
Sbjct: 50 HQNLSINEMDSSSPKRPRQHQF--GLFCTVFKPLLLVPSGF 88
>SB_49672| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 132
Score = 29.1 bits (62), Expect = 3.8
Identities = 15/39 (38%), Positives = 21/39 (53%)
Frame = -3
Query: 256 HQKLKLTEREEAAPKMPRGQRFSXGLFFTTSVNILAVKL 140
H+ L + ER+ ++PK PR +F FF T L V L
Sbjct: 21 HENLSINERDSSSPKRPRQHQFG---FFCTVFKPLPVLL 56
>SB_27683| Best HMM Match : Exo_endo_phos (HMM E-Value=1.5e-20)
Length = 672
Score = 28.7 bits (61), Expect = 5.0
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = -3
Query: 256 HQKLKLTEREEAAPKMPRGQRFSXGLFFT 170
HQ L + E + ++PK PR +F GLF T
Sbjct: 56 HQNLSINEMDSSSPKRPRQHQF--GLFCT 82
>SB_24891| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 345
Score = 28.7 bits (61), Expect = 5.0
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = -3
Query: 256 HQKLKLTEREEAAPKMPRGQRFSXGLFFT 170
HQ L + E + ++PK PR +F GLF T
Sbjct: 21 HQNLSINEMDSSSPKRPRQHQF--GLFCT 47
>SB_4415| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 640
Score = 28.7 bits (61), Expect = 5.0
Identities = 9/15 (60%), Positives = 12/15 (80%)
Frame = -2
Query: 98 CHCRDGDSKQTNDCL 54
CHCRDG+S Q N+ +
Sbjct: 336 CHCRDGESVQVNNAM 350
>SB_2840| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2248
Score = 28.7 bits (61), Expect = 5.0
Identities = 34/154 (22%), Positives = 65/154 (42%), Gaps = 2/154 (1%)
Frame = +1
Query: 235 QLALASDGETHEELLKAIGFPDDDAIRTEFASKSRDLRSIKGVELKMANKVYVHDGGKLD 414
Q+ +SD + L + F ++DA SK + ++++ K+Y +D
Sbjct: 703 QVTTSSDVNNALDELDEVQFSEEDARGIRGLSKDATFK----IKIEEKRKLYQISKAAVD 758
Query: 415 ENFAVVXQDVFNSDVQNIDFSKNTVA--AKSINDWVEENTNNRIKDLVNPDSLSSATAAV 588
+ D F ++ D S N+ + +++N+N+ + D +L A V
Sbjct: 759 GDTGSKMADRFLEQLER-DPSANSDGRGTDEPSGHLDKNSNSEVSDETLEKTLK---ANV 814
Query: 589 LVNAIYFKGAWSSKFDERLTSDRDFYVSKDKTIK 690
N KG++S D+ SD +S DK++K
Sbjct: 815 QDNIKVTKGSFSDSSDKSSGSDNTDKMSSDKSVK 848
>SB_48263| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 132
Score = 28.7 bits (61), Expect = 5.0
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = -3
Query: 256 HQKLKLTEREEAAPKMPRGQRFSXGLFFT 170
HQ L + E + ++PK PR +F GLF T
Sbjct: 21 HQNLSINEMDSSSPKRPRQHQF--GLFCT 47
>SB_29987| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 118
Score = 28.7 bits (61), Expect = 5.0
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = -3
Query: 256 HQKLKLTEREEAAPKMPRGQRFSXGLFFT 170
HQ L + E + ++PK PR +F GLF T
Sbjct: 7 HQNLSINEMDSSSPKCPRQHQF--GLFCT 33
>SB_5257| Best HMM Match : SlyX (HMM E-Value=2.2)
Length = 641
Score = 28.3 bits (60), Expect = 6.6
Identities = 13/50 (26%), Positives = 26/50 (52%), Gaps = 3/50 (6%)
Frame = +1
Query: 406 KLDENFAVVXQDVFNSDVQNIDFSKNTVAAKSINDW---VEENTNNRIKD 546
K +E+ + +F+ + +N+DFS + ++ DW VE N ++D
Sbjct: 460 KFEEDLRI--SSMFSGEGENVDFSTDLYPTGNVEDWLLEVENTMRNSLRD 507
>SB_13347| Best HMM Match : PsbX (HMM E-Value=0.21)
Length = 101
Score = 27.9 bits (59), Expect = 8.7
Identities = 9/24 (37%), Positives = 16/24 (66%)
Frame = -3
Query: 82 AIVNKQMIVFMFVACVSRMSASCR 11
A++N +IV + + C+SR +CR
Sbjct: 77 ALINSLLIVTLHITCISRKDKTCR 100
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,155,069
Number of Sequences: 59808
Number of extensions: 379317
Number of successful extensions: 1230
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1091
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1228
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1901817086
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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